Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1311 Capsella rubella HOM05D003134 ORTHO05D003500 5.8e-62 241.1 161 100.0
AL2G25140 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 3.2e-52 208.8 163 74.8
AT1G66890 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 5.1e-50 201.4 162 74.1
CARHR059040 Cardamine hirsuta HOM05D003134 ORTHO05D003500 1.8e-47 193.0 168 73.8
Thhalv10019248m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 1.4e-44 183.3 168 66.1
Sp5g21880 Schrenkiella parvula HOM05D003134 ORTHO05D003500 3.2e-44 182.2 168 66.1
C06p43260 Brassica napus HOM05D003134 ORTHO05D003500 3.9e-42 175.3 168 63.7
BcaB03g15220 Brassica carinata HOM05D003134 ORTHO05D003500 1.5e-41 173.3 168 65.5
BcaC08g46122 Brassica carinata HOM05D003134 ORTHO05D003500 1.9e-41 172.9 168 62.5
A07p33710 Brassica napus HOM05D003134 ORTHO05D003500 7.4e-41 171.0 169 63.3
BraA07t30998Z Brassica rapa HOM05D003134 ORTHO05D003500 7.4e-41 171.0 169 63.3
Aa31LG2G3400 Aethionema arabicum HOM05D003134 ORTHO05D003500 8.2e-40 167.5 177 63.8
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 2.2e-32 142.9 163 57.7
BolC6t39113H Brassica oleracea HOM05D000464 ORTHO05D003500 4.8e-32 141.7 152 59.2
Sp7g03820 Schrenkiella parvula HOM05D003134 ORTHO05D003500 9.0e-31 137.5 163 57.1
THA.LOC104805579 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 1.6e-27 126.7 174 50.6
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 2.0e-22 109.8 171 46.2
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 1.2e-19 100.5 163 58.3
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 1.6e-19 100.1 180 47.2
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 2.7e-19 99.4 175 41.7
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 4.7e-19 98.6 167 44.3
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 1.0e-18 97.4 172 45.9
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.4e-18 97.1 177 42.4
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 1.8e-18 96.7 173 45.7
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 2.3e-18 96.3 164 45.1
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 5.1e-18 95.1 161 42.2
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.4e-17 92.0 168 39.9
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 4.4e-17 92.0 170 47.1
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 5.7e-17 91.7 161 45.3
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 7.4e-17 91.3 176 42.0
ClCG11G007810 Citrullus lanatus HOM05D003134 ORTHO05D003500 1.7e-16 90.1 182 39.6
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 1.7e-16 90.1 166 45.2
QL02p050634 Quercus lobata HOM05D003134 ORTHO05D003500 1.7e-16 90.1 180 43.9
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 2.2e-16 89.7 168 51.8
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 2.8e-16 89.4 171 40.9
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 3.7e-16 89.0 170 41.2
Aa31LG11G13410 Aethionema arabicum HOM05D003134 ORTHO05D003500 4.8e-16 88.6 167 40.1
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 4.8e-16 88.6 174 40.8
QL02p049588 Quercus lobata HOM05D003134 ORTHO05D003500 4.8e-16 88.6 180 42.8
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 4.8e-16 88.6 174 39.7
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 6.3e-16 88.2 166 41.6
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.2e-16 87.8 170 41.8
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 1.1e-15 87.4 165 41.2
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.1e-15 87.4 176 40.3
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 1.1e-15 87.4 173 40.5
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 1.4e-15 87.0 173 39.9
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 1.8e-15 86.7 188 38.3
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 2.4e-15 86.3 162 40.1
AL6G27080 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 3.1e-15 85.9 173 41.0
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.1e-15 85.9 168 38.7
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.3e-15 85.1 172 40.1
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 6.9e-15 84.7 172 39.5
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 9.1e-15 84.3 161 38.5
Sed0003377 Sechium edule HOM05D003134 ORTHO05D003500 9.1e-15 84.3 171 40.4
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 1.2e-14 84.0 166 41.6
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 1.2e-14 84.0 167 38.3
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 1.5e-14 83.6 180 38.3
Manes.01G112200 Manihot esculenta HOM05D003134 ORTHO05D003500 1.5e-14 83.6 160 42.5
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 1.5e-14 83.6 163 41.7
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 1.5e-14 83.6 163 41.7
AUR62009019 Chenopodium quinoa HOM05D003134 ORTHO05D003500 2.0e-14 83.2 177 41.8
SGA_v2.0_scaffold49G18114 Striga asiatica HOM05D003134 ORTHO05D003500 2.0e-14 83.2 164 40.9
CiPaw.04G043700 Carya illinoinensis HOM05D003134 ORTHO05D003500 2.6e-14 82.8 171 37.4
Oeu036853.1 Olea europaea HOM05D003134 ORTHO05D003500 2.6e-14 82.8 168 41.7
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 2.6e-14 82.8 171 40.4
Ah.16g101650 Amaranthus hybridus HOM05D003134 ORTHO05D003500 3.4e-14 82.4 176 40.9
FAN10G3294 Fragaria x ananassa HOM05D000266 ORTHO05D000765 3.4e-14 82.4 168 38.1
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 4.5e-14 82.0 177 40.1
AUR62023283 Chenopodium quinoa HOM05D003134 ORTHO05D003500 5.9e-14 81.6 177 39.0
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 5.9e-14 81.6 176 37.5
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 5.9e-14 81.6 166 41.0
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 5.9e-14 81.6 168 39.3
Carub.0006s1439 Capsella rubella HOM05D003134 ORTHO05D003500 7.7e-14 81.3 172 39.0
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 7.7e-14 81.3 169 38.5
Lalb_Chr10g0091341 Lupinus albus HOM05D003134 ORTHO05D003500 1.0e-13 80.9 161 47.8
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 1.0e-13 80.9 162 48.1
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 1.7e-13 80.1 171 40.4
AT5G16200 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 2.2e-13 79.7 175 40.0
FvH4_7g03610 Fragaria vesca HOM05D003134 ORTHO05D003500 2.2e-13 79.7 168 38.7
FAN06G4960 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.2e-13 79.7 168 38.7
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 2.2e-13 79.7 161 49.1
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.2e-13 79.7 164 40.2
BcaB08g36854 Brassica carinata HOM05D003134 ORTHO05D003500 2.9e-13 79.3 170 37.6
MELO3C008147.2 Cucumis melo HOM05D003134 ORTHO05D003500 2.9e-13 79.3 186 38.7
CsaV3_2G033780 Cucumis sativus L. HOM05D003134 ORTHO05D003500 2.9e-13 79.3 179 38.5
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 2.9e-13 79.3 176 37.5
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 2.9e-13 79.3 174 38.5
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 2.9e-13 79.3 162 37.7
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 5.0e-13 78.6 167 43.7
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 5.0e-13 78.6 168 39.3
Ca_08085_v3 Cicer arietinum L. HOM05D003134 ORTHO05D003500 6.5e-13 78.2 161 38.5
Peaxi162Scf00394g00095 Petunia axillaris HOM05D003134 ORTHO05D003500 8.5e-13 77.8 97 53.6
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 1.1e-12 77.4 165 41.8
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 1.1e-12 77.4 164 40.2
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 1.4e-12 77.0 169 46.7
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 1.4e-12 77.0 168 40.5
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 1.9e-12 76.6 164 41.5
FAN16G3541 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.5e-12 76.3 170 42.9
A10p22860 Brassica napus HOM05D003134 ORTHO05D003500 4.2e-12 75.5 170 37.6
BraA10t44353Z Brassica rapa HOM05D003134 ORTHO05D003500 4.2e-12 75.5 170 37.6
Nitab4.5_0000753g0120 Nicotiana tabacum HOM05D003134 ORTHO05D003500 4.2e-12 75.5 92 53.3
Oeu008433.1 Olea europaea HOM05D003134 ORTHO05D003500 4.2e-12 75.5 170 38.2
EL10Ac2g04546 Beta vulgaris HOM05D003134 ORTHO05D003500 5.5e-12 75.1 182 37.9
BcaC04g18897 Brassica carinata HOM05D003134 ORTHO05D003500 5.5e-12 75.1 170 37.6
C09p60820 Brassica napus HOM05D003134 ORTHO05D003500 5.5e-12 75.1 170 37.6
BolC9t58922H Brassica oleracea HOM05D003134 ORTHO05D003500 5.5e-12 75.1 170 37.6
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 9.4e-12 74.3 161 37.3
Eucgr.J01514 Eucalyptus grandis HOM05D003134 ORTHO05D003500 9.4e-12 74.3 156 36.5
FAN22G2289 Fragaria x ananassa HOM05D003134 ORTHO05D003500 9.4e-12 74.3 168 53.6
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 9.4e-12 74.3 161 47.2
PGR004G0132 Punica granatum HOM05D003134 ORTHO05D003500 9.4e-12 74.3 175 38.9
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 1.2e-11 73.9 160 51.2
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 1.6e-11 73.6 170 47.6
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 2.1e-11 73.2 163 38.7
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 2.1e-11 73.2 171 37.4
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.0e-10 70.9 169 41.4
FAN22G2030 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.4e-10 70.5 92 53.3
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 1.4e-10 70.5 179 35.8
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 1.4e-10 70.5 180 35.6
Ah.10g037670 Amaranthus hybridus HOM05D003134 ORTHO05D003500 1.8e-10 70.1 174 46.6
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 1.8e-10 70.1 163 38.7
Lsat_1_v5_gn_2_81120 Lactuca sativa HOM05D003134 ORTHO05D003500 1.8e-10 70.1 175 37.1
Thhalv10015766m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 2.3e-10 69.7 172 37.2
FAN13G0633 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.3e-10 69.7 90 50.0
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.3e-10 69.7 165 35.2
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.3e-10 69.7 165 35.2
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 3.9e-10 68.9 170 41.8
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 3.9e-10 68.9 175 32.6
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 3.9e-10 68.9 166 45.8
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 5.2e-10 68.6 163 38.7
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 5.2e-10 68.6 164 38.4
THA.LOC104827465 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 5.2e-10 68.6 100 50.0
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.8e-10 67.8 165 37.6
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.8e-10 67.8 163 38.0
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 8.8e-10 67.8 175 32.6
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 8.8e-10 67.8 175 32.6
Phvul.004G066700 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 1.5e-09 67.0 163 35.0
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.5e-09 67.0 92 48.9
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 2.0e-09 66.6 167 36.5
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 2.0e-09 66.6 174 33.3
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 2.6e-09 66.2 167 37.7
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 2.6e-09 66.2 170 38.8
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 3.3e-09 65.9 168 37.5
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 5.7e-09 65.1 179 34.6
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 5.7e-09 65.1 168 36.9
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 5.7e-09 65.1 180 37.2
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 7.4e-09 64.7 169 37.3
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 9.7e-09 64.3 163 35.6
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 1.3e-08 63.9 167 37.7
Duzib133G1507 Durio zibethinus HOM05D003134 ORTHO05D003500 1.3e-08 63.9 186 32.3
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 1.7e-08 63.5 174 32.2
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 2.2e-08 63.2 166 37.3
Nn4g23933 Nelumbo nucifera HOM05D003134 ORTHO05D003500 2.8e-08 62.8 169 34.3
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 4.8e-08 62.0 164 35.4
Duzib138G0856 Durio zibethinus HOM05D003134 ORTHO05D003500 6.3e-08 61.6 177 31.6
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 6.3e-08 61.6 165 35.2
MBI16_g37123_MAGBIO Magnolia biondii HOM05D003134 ORTHO05D003500 8.2e-08 61.2 175 32.0
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 2.4e-07 59.7 163 35.0
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 4.1e-07 58.9 168 36.9
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 9.1e-07 57.8 168 38.1
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 9.1e-07 57.8 168 38.1
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 9.1e-07 57.8 172 38.4
Sabra17G0096900 Salix brachista HOM05D003134 ORTHO05D003500 9.1e-07 57.8 124 41.9
ECA238G3055 Erigeron canadensis HOM05D003134 ORTHO05D003500 1.2e-06 57.4 179 34.1
Lj5g0013847 Lotus japonicus HOM05D003134 ORTHO05D003500 1.2e-06 57.4 161 37.3
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 1.6e-06 57.0 168 32.7
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 1.6e-06 57.0 168 32.7
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 1.6e-06 57.0 168 32.7
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 2.0e-06 56.6 168 35.7
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 2.0e-06 56.6 168 35.7
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.0e-06 56.6 160 36.2
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.0e-06 56.6 88 46.6
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 2.0e-06 56.6 169 36.1
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 2.0e-06 56.6 169 36.1
ATR1125G046 Amborella trichopoda HOM05D003134 ORTHO05D003500 2.6e-06 56.2 174 32.8
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 2.6e-06 56.2 171 36.8
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 2.6e-06 56.2 163 34.4
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 3.5e-06 55.8 166 33.1
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 3.5e-06 55.8 166 33.1
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 4.5e-06 55.5 192 34.4
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 5.9e-06 55.1 169 36.1
VMungo0464G0100 Vigna mungo HOM05D003134 ORTHO05D003500 7.7e-06 54.7 155 33.5


User provided reference genes

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