Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 2.1e-197 692.2 356 100.0
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.4e-185 651.0 356 92.7
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 3.3e-182 641.7 356 91.3
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 5.8e-179 630.9 356 88.8
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 2.2e-178 629.0 356 89.0
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.2e-177 625.2 343 92.4
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 3.2e-177 625.2 356 87.6
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 7.8e-176 620.5 356 87.6
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.3e-175 619.8 356 87.1
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.3e-175 619.8 356 87.1
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 6.6e-175 617.5 356 87.9
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 1.2e-173 613.2 355 87.9
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 4.9e-162 574.7 356 82.6
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 8.4e-146 520.8 356 73.3
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 1.4e-145 520.0 358 73.2
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 4.2e-145 518.5 356 72.2
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.2e-144 516.9 355 71.3
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 6.0e-144 514.6 357 72.8
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.1e-142 510.4 358 70.7
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.5e-142 510.0 358 70.7
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 1.5e-142 510.0 360 70.0
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.9e-142 509.6 354 71.2
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 2.5e-142 509.2 358 70.4
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 2.5e-142 509.2 360 69.4
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 3.3e-142 508.8 360 72.8
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 2.1e-141 506.1 358 70.9
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.6e-141 505.4 358 70.1
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 3.6e-141 505.4 361 70.6
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 1.4e-140 503.4 367 69.2
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.4e-140 503.4 366 70.2
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 3.1e-140 502.3 354 72.3
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 4.0e-140 501.9 361 70.1
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 5.3e-140 501.5 357 70.9
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 6.9e-140 501.1 356 69.4
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 9.0e-140 500.7 355 69.6
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 2.6e-139 499.2 356 69.1
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 3.4e-139 498.8 360 67.8
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 3.4e-139 498.8 356 71.1
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 4.5e-139 498.4 335 74.0
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 9.9e-139 497.3 333 75.7
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 9.9e-139 497.3 372 67.7
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.7e-138 496.5 377 68.4
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 1.7e-138 496.5 355 69.0
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.7e-138 496.5 355 69.3
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 2.2e-138 496.1 379 68.6
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.4e-137 493.4 358 69.3
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 3.2e-137 492.3 331 75.2
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.6e-136 490.0 362 69.6
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 3.5e-136 488.8 356 69.7
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 7.9e-136 487.6 354 70.1
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 7.9e-136 487.6 356 69.4
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 7.9e-136 487.6 357 68.1
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.0e-135 487.3 356 68.5
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.3e-135 486.9 362 66.6
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.8e-135 486.5 358 69.8
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.3e-135 486.1 354 69.8
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 2.3e-135 486.1 357 69.2
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 3.9e-135 485.3 365 67.1
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 3.3e-134 482.3 330 72.1
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 4.8e-133 478.4 363 66.4
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.1e-132 477.2 333 73.0
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 6.9e-132 474.6 360 67.8
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 9.0e-132 474.2 355 68.7
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 5.8e-131 471.5 330 71.5
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 3.8e-130 468.8 360 65.6
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 4.9e-130 468.4 362 66.9
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.1e-126 457.2 364 63.7
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.1e-126 457.2 410 59.8
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 4.3e-126 455.3 258 89.1
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 4.3e-126 455.3 330 67.9
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 5.3e-124 448.4 258 88.8
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 7.6e-123 444.5 360 66.9
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.3e-122 443.7 360 63.9
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.9e-121 439.9 433 57.5
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 4.2e-121 438.7 355 62.8
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 9.3e-121 437.6 353 64.3
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.1e-120 436.4 358 63.1
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 6.1e-120 434.9 355 65.1
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 3.0e-119 432.6 282 75.9
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 6.7e-119 431.4 353 62.9
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 2.2e-117 426.4 332 68.7
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.0e-114 417.5 301 68.4
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.7e-114 416.8 337 63.8
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 3.2e-113 412.5 335 64.2
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 3.6e-112 409.1 353 60.9
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.7e-110 401.7 354 60.2
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.2e-107 394.0 263 75.3
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 6.5e-106 388.3 367 57.5
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 1.4e-103 380.6 260 74.2
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 1.1e-102 377.5 332 56.9
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 2.0e-102 376.7 337 57.3
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 3.3e-102 375.9 258 73.6
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 7.4e-102 374.8 337 57.9
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.8e-100 370.2 265 72.5
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.6e-99 367.1 261 72.4
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.9e-97 360.1 294 63.9
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 2.5e-97 359.8 271 68.6
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 5.5e-97 358.6 301 59.8
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.6e-96 355.9 272 62.5
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 7.5e-94 348.2 251 70.5
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.0e-90 337.8 256 67.2
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 7.2e-89 331.6 355 49.6
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 3.2e-81 306.2 311 53.4
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 9.4e-81 304.7 207 75.4
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 8.8e-79 298.1 349 47.3
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.1e-73 281.2 346 47.1
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.6e-72 277.3 187 74.3
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.1e-68 264.6 219 66.7
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 8.0e-64 248.4 226 58.8
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 3.3e-57 226.5 439 36.0
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.7e-50 204.1 216 50.5
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 3.0e-50 203.4 380 35.3
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.8e-47 194.1 140 68.6
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.4e-38 162.9 140 57.1
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.9e-36 157.5 165 54.5
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.7e-34 151.0 319 32.0
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 4.5e-30 136.3 146 51.4
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 9.9e-30 135.2 105 61.9
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.4e-28 130.6 96 64.6
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.2e-28 129.8 138 54.3
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 5.4e-28 129.4 118 50.8
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.3e-26 124.0 91 73.6
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 1.4e-23 114.8 297 29.6
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 9.0e-23 112.1 81 66.7
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 1.5e-22 111.3 75 70.7
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 1.7e-21 107.8 73 69.9
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 3.2e-20 103.6 93 62.4
CARHR058540 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.2e-13 80.9 75 58.7
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 9.6e-09 65.5 111 33.3
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.4e-07 60.8 169 26.6
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 4.1e-07 60.1 147 27.2
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 5.3e-07 59.7 150 27.3
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 5.3e-07 59.7 146 29.5
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.9e-07 59.3 169 26.0
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.9e-07 59.3 169 26.0
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 1.5e-06 58.2 143 27.3
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.5e-06 58.2 169 26.0
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 1.5e-06 58.2 170 26.5
Ah.10g037930 Amaranthus hybridus HOM05D006412 ORTHO05D008025 4.5e-06 56.6 29 86.2
CiPaw.09G101500 Carya illinoinensis HOM05D005388 ORTHO05D006281 5.9e-06 56.2 141 27.0
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 7.6e-06 55.8 86 34.9
Cpa.g.sc89.56 Carica papaya HOM05D005388 ORTHO05D006281 1.0e-05 55.5 151 25.8
FAN04G2939 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.0e-05 55.5 169 26.0
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 1.0e-05 55.5 69 40.6


User provided reference genes

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