Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 0.0e+00 1348.6 829 100.0
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 0.0e+00 1120.1 830 84.2
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 0.0e+00 1116.7 813 85.9
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 2.9e-298 1028.5 840 73.6
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 2.6e-291 1005.4 804 79.1
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 1.1e-289 1000.0 844 72.7
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 6.5e-274 947.6 828 69.0
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 6.1e-272 941.0 846 73.9
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 8.7e-271 937.2 847 73.6
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.9e-270 936.0 849 73.3
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 2.5e-270 935.6 846 73.6
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 9.5e-233 810.8 817 62.4
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 2.0e-230 803.1 831 57.5
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 1.8e-170 604.0 799 54.2
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 1.2e-166 591.3 822 50.9
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 1.1e-164 584.7 819 53.1
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 5.5e-164 582.4 819 53.0
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 9.3e-164 581.6 799 56.9
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 2.1e-163 580.5 833 52.5
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.0e-162 578.2 794 53.1
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 1.5e-161 574.3 823 51.8
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 5.7e-161 572.4 828 49.0
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.8e-159 567.4 815 49.3
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.4e-159 567.0 812 50.4
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 2.4e-159 567.0 835 47.4
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 4.1e-159 566.2 812 50.4
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 5.3e-159 565.8 814 50.0
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 7.6e-158 562.0 818 50.5
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.7e-157 560.8 818 50.7
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 6.5e-157 558.9 828 45.8
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 8.5e-157 558.5 824 45.6
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 8.5e-157 558.5 856 48.6
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 4.2e-156 556.2 831 52.9
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.2e-156 556.2 795 50.7
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 9.3e-156 555.1 848 43.6
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.2e-155 554.7 796 50.4
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.7e-155 553.5 806 51.9
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 6.1e-155 552.4 810 48.9
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 6.1e-155 552.4 825 50.4
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.0e-154 551.6 790 50.3
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.8e-154 550.8 794 53.8
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 5.1e-154 549.3 811 49.1
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 1.5e-153 547.7 840 50.1
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 7.4e-153 545.4 794 53.5
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 8.2e-152 542.0 829 48.1
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 2.4e-151 540.4 838 44.9
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 6.9e-151 538.9 816 48.4
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 9.1e-151 538.5 826 49.8
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 1.5e-150 537.7 845 46.0
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.0e-150 537.3 793 51.1
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 4.5e-150 536.2 830 47.3
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.3e-149 534.6 863 46.0
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 2.9e-149 533.5 813 50.7
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 8.5e-149 531.9 834 43.8
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.2e-148 530.0 836 47.1
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.6e-147 527.7 807 48.6
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.6e-147 527.7 817 47.0
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 4.6e-147 526.2 820 47.3
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 6.1e-147 525.8 835 46.9
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 6.1e-147 525.8 800 49.1
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 1.0e-146 525.0 813 52.4
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 3.0e-146 523.5 799 49.1
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 1.5e-145 521.2 810 48.9
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.5e-145 521.2 818 50.2
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 2.6e-145 520.4 810 48.6
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 9.7e-145 518.5 827 43.4
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.7e-144 516.5 798 49.4
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 1.1e-143 515.0 821 47.9
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 1.8e-143 514.2 804 49.1
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 2.4e-143 513.8 801 50.7
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 3.4e-142 510.0 810 47.5
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 5.9e-142 509.2 804 49.0
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 3.8e-141 506.5 785 49.7
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 5.0e-141 506.1 816 48.8
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 2.5e-140 503.8 828 44.0
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 3.2e-140 503.4 828 41.7
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.2e-139 501.5 828 47.9
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 2.7e-139 500.4 832 45.9
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 3.6e-139 500.0 826 45.3
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.8e-138 497.7 856 47.1
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 1.5e-137 494.6 814 49.6
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 2.0e-137 494.2 816 47.7
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 1.3e-136 491.5 821 42.5
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 2.8e-136 490.3 802 50.1
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 8.2e-136 488.8 812 47.7
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 2.6e-134 483.8 791 42.4
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 2.9e-133 480.3 807 44.4
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 2.9e-133 480.3 804 49.6
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 3.2e-132 476.9 809 47.6
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 7.2e-132 475.7 762 48.3
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 2.0e-129 467.6 817 46.4
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 2.8e-128 463.8 693 51.4
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 3.0e-122 443.7 695 49.1
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 4.8e-120 436.4 836 44.1
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 8.6e-117 425.6 841 43.4
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.5e-116 424.9 688 48.3
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 1.2e-113 415.2 822 44.8
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.5e-108 398.3 846 40.5
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 4.7e-107 393.3 866 37.0
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 8.9e-106 389.0 741 46.8
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 4.9e-104 383.3 525 48.4
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 2.4e-103 380.9 813 45.4
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.3e-100 370.2 837 38.0
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 2.8e-99 367.5 877 36.3
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 4.9e-88 330.1 845 37.3
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.5e-86 323.9 792 41.8
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 3.5e-86 323.9 869 40.0
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 3.9e-85 320.5 486 45.5
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 2.4e-71 274.6 810 32.1
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.4e-63 248.8 237 57.8
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.3e-60 237.7 615 41.5
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 3.0e-53 214.5 589 32.1
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 3.4e-49 201.1 501 33.3
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 4.9e-48 197.2 501 33.5
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.2e-43 181.8 505 34.1
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 5.5e-39 167.2 188 49.5
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 8.8e-37 159.8 792 24.7
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.1e-34 152.9 112 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 4.5e-33 147.5 834 27.6
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 3.9e-29 134.4 717 33.2
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 6.7e-29 133.7 247 36.8
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 2.2e-27 128.6 500 28.6
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 1.5e-25 122.5 155 45.2
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 3.2e-23 114.8 198 46.5
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 1.6e-22 112.5 205 40.0
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 1.1e-20 106.3 371 27.2
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.5e-15 88.6 85 55.3
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 4.4e-12 77.8 130 42.3
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.9e-07 62.4 118 39.8
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 1.9e-07 62.4 47 61.7
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 2.5e-07 62.0 70 45.7
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 3.2e-07 61.6 219 26.9
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 6.1e-06 57.4 65 44.6


User provided reference genes

Program Settings