Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1030 Capsella rubella HOM05D001789 ORTHO05D001755 2.3e-183 645.6 368 100.0
CARHR078940 Cardamine hirsuta HOM05D001789 ORTHO05D001755 4.3e-68 262.7 316 62.0
Thhalv10020698m.g Eutrema salsugineum HOM05D001789 ORTHO05D001755 1.3e-56 224.6 318 55.7
A03p33800 Brassica napus HOM05D001789 ORTHO05D001755 4.1e-55 219.5 316 55.1
Sp3g03550 Schrenkiella parvula HOM05D001789 ORTHO05D001755 5.4e-55 219.2 318 54.1
BcaC01g04353 Brassica carinata HOM05D001789 ORTHO05D001755 7.8e-54 215.3 316 54.1
Carub.0003s0386 Capsella rubella HOM05D001789 ORTHO05D001755 4.3e-52 209.5 316 54.4
AL3G14790 Arabidopsis lyrata HOM05D001789 ORTHO05D001755 7.3e-52 208.8 316 53.8
C03p41100 Brassica napus HOM05D001789 ORTHO05D001755 1.4e-50 204.5 313 52.7
BraA01t04507Z Brassica rapa HOM05D001789 ORTHO05D001755 3.1e-50 203.4 332 51.8
BcaB04g19305 Brassica carinata HOM05D001789 ORTHO05D001755 2.6e-49 200.3 317 51.7
BcaB04g21349 Brassica carinata HOM05D001789 ORTHO05D001755 4.9e-48 196.1 316 51.9
AT3G04710 Arabidopsis thaliana HOM05D001789 ORTHO05D001755 1.0e-45 188.3 313 52.1
BNapus_Darmor_BZH_scaffold_78p00990 Brassica napus HOM05D001789 ORTHO05D001755 1.5e-44 184.5 331 49.5
BcaC09g47780 Brassica carinata HOM05D001789 ORTHO05D001755 4.0e-42 176.4 318 50.0
RcHm_v2.0_Chr3g0450651 Rosa chinensis HOM05D001789 ORTHO05D001755 7.8e-38 162.2 322 43.2
Aa31LG5G15100 Aethionema arabicum HOM05D001789 ORTHO05D001755 1.1e-36 158.3 314 46.5
ECA238G2814 Erigeron canadensis HOM05D001789 ORTHO05D001755 1.5e-36 157.9 224 55.4
MSTRG.20457 Avicennia marina HOM05D001789 ORTHO05D001755 4.7e-35 152.9 253 52.2
THA.LOC104821668 Tarenaya hassleriana HOM05D001789 ORTHO05D001755 2.4e-34 150.6 334 43.7
COL.COLO4_15370 Corchorus olitorius HOM05D001789 ORTHO05D001755 2.6e-33 147.1 322 41.6
FAN02G1989 Fragaria x ananassa HOM05D001789 ORTHO05D001755 3.4e-33 146.7 336 42.3
Duzib128G1133 Durio zibethinus HOM05D001789 ORTHO05D001755 4.4e-33 146.4 316 42.4
Cc02_g30810 Coffea canephora HOM05D001789 ORTHO05D001755 7.6e-33 145.6 280 36.1
CDE06G0784 Ceratophyllum demersum HOM05D001789 ORTHO05D001755 1.3e-32 144.8 223 39.0
FvH4_6g02680 Fragaria vesca HOM05D001789 ORTHO05D001755 1.3e-32 144.8 322 42.5
FAN09G2804 Fragaria x ananassa HOM05D001789 ORTHO05D001755 1.3e-32 144.8 322 42.9
Gohir.A13G169500 Gossypium hirsutum HOM05D001789 ORTHO05D001755 4.2e-31 139.8 322 33.2
Manes.09G151500 Manihot esculenta HOM05D001789 ORTHO05D001755 7.1e-31 139.0 224 47.8
GSVIVG01036270001 Vitis vinifera HOM05D001789 ORTHO05D001755 1.2e-30 138.3 320 33.8
Gohir.D13G175000 Gossypium hirsutum HOM05D001789 ORTHO05D001755 1.6e-30 137.9 361 32.4
Ah.06g192110 Amaranthus hybridus HOM05D001789 ORTHO05D001755 2.1e-30 137.5 280 35.4
Gorai.013G200300 Gossypium raimondii HOM05D001789 ORTHO05D001755 4.6e-30 136.3 304 34.9
Cfa006403 Carpinus fangiana HOM05D001789 ORTHO05D001755 3.0e-29 133.7 221 52.5
Dinv20290 Davidia involucrata HOM05D001789 ORTHO05D001755 1.9e-28 131.0 322 32.3
TAR365G0302 Trochodendron aralioides HOM05D001789 ORTHO05D001755 1.9e-28 131.0 148 50.0
MD04G1226000 Malus domestica HOM05D001789 ORTHO05D001755 3.6e-27 126.7 322 42.2
Migut.B01098 Erythranthe guttata HOM05D001789 ORTHO05D001755 4.0e-26 123.2 219 51.6
Peaxi162Scf00282g00618 Petunia axillaris HOM05D001789 ORTHO05D001755 9.0e-26 122.1 263 33.5
CSS0016190 Camellia sinensis var. sinensis HOM05D001789 ORTHO05D001755 1.2e-25 121.7 117 54.7
Cpa.g.sc617.3 Carica papaya HOM05D001789 ORTHO05D001755 2.6e-25 120.6 303 32.0
Sed0022842 Sechium edule HOM05D001789 ORTHO05D001755 5.8e-25 119.4 229 48.0
Eucgr.H04321 Eucalyptus grandis HOM05D001789 ORTHO05D001755 2.9e-24 117.1 117 53.0
ClCG02G016750 Citrullus lanatus HOM05D001789 ORTHO05D001755 9.3e-23 112.1 290 31.4
Nn1g02587 Nelumbo nucifera HOM05D001789 ORTHO05D001755 2.7e-22 110.5 260 38.1
unitig_37.g12638 Utricularia gibba HOM05D001789 ORTHO05D001755 6.0e-22 109.4 220 35.0
ATR0665G154 Amborella trichopoda HOM05D001789 ORTHO05D001755 1.0e-21 108.6 281 32.7
CANSAT54G0997 Cannabis sativa HOM05D001789 ORTHO05D001755 3.9e-21 106.7 363 33.9
CiPaw.07G068600 Carya illinoinensis HOM05D001789 ORTHO05D001755 5.1e-21 106.3 295 37.3
Lsat_1_v5_gn_2_64421 Lactuca sativa HOM05D001789 ORTHO05D001755 5.1e-21 106.3 324 30.2
SEGI_21200 Sequoiadendron giganteum HOM05D001789 ORTHO05D001755 5.1e-21 106.3 121 47.1
Ciclev10028402m.g Citrus clementina HOM05D001789 ORTHO05D001755 1.1e-20 105.1 295 37.3
CsaV3_2G003990 Cucumis sativus L. HOM05D001789 ORTHO05D001755 5.6e-20 102.8 258 41.1
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 7.4e-20 102.4 114 57.0
AUR62004900 Chenopodium quinoa HOM05D001789 ORTHO05D001755 7.4e-20 102.4 351 34.8
PGR004G2017 Punica granatum HOM05D001789 ORTHO05D001755 1.6e-19 101.3 276 41.7
AUR62001052 Chenopodium quinoa HOM05D001789 ORTHO05D001755 6.2e-19 99.4 351 34.5
Thecc.05G281000 Theobroma cacao HOM05D001789 ORTHO05D001755 1.4e-18 98.2 322 38.5
Nitab4.5_0009495g0030 Nicotiana tabacum HOM05D001789 ORTHO05D001755 1.8e-18 97.8 269 40.5
Prupe.6G344800 Prunus persica HOM05D001789 ORTHO05D001755 3.1e-18 97.1 322 36.6
CAN.G134.77 Capsicum annuum HOM05D001789 ORTHO05D001755 4.0e-18 96.7 152 43.4
MELO3C004392.2 Cucumis melo HOM05D001789 ORTHO05D001755 5.3e-18 96.3 259 39.0
Sopen01g040880 Solanum pennellii HOM05D001789 ORTHO05D001755 5.3e-18 96.3 121 47.1
EL10Ac4g09088 Beta vulgaris HOM05D001789 ORTHO05D001755 1.2e-17 95.1 240 43.8
Aqoxy2G03554 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 3.4e-17 93.6 158 39.9
Manes.08G136000 Manihot esculenta HOM05D001789 ORTHO05D001755 3.4e-17 93.6 163 38.7
Sopen01g040860 Solanum pennellii HOM05D001789 ORTHO05D001755 4.5e-17 93.2 278 38.5
Os05g0103600 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 5.8e-17 92.8 218 29.4
Sc15g0002530 Simmondsia chinensis HOM05D001789 ORTHO05D001755 9.9e-17 92.0 124 45.2
Nitab4.5_0006088g0040 Nicotiana tabacum HOM05D001789 ORTHO05D001755 2.2e-16 90.9 265 34.3
Sabra05G0047600 Salix brachista HOM05D001789 ORTHO05D001755 2.2e-16 90.9 162 38.3
Lju50C34T11 Lonicera japonica HOM05D001789 ORTHO05D001755 4.9e-16 89.7 304 28.3
Aqoxy2G03556 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 1.4e-15 88.2 219 42.5
C09p67110 Brassica napus HOM05D001789 ORTHO05D001755 1.4e-15 88.2 126 42.1
SGA_v2.0_scaffold36G14395 Striga asiatica HOM05D001789 ORTHO05D001755 1.9e-15 87.8 269 41.3
Solyc01g097220.3 Solanum lycopersicum HOM05D001789 ORTHO05D001755 2.5e-15 87.4 255 39.6
Psat4g049680 Pisum sativum HOM05D001789 ORTHO05D001755 3.2e-15 87.0 153 35.9
Rhsim07G0074300 Rhododendron simsii HOM05D001789 ORTHO05D001755 3.2e-15 87.0 317 35.6
vmacro13812 Vaccinium macrocarpon HOM05D001789 ORTHO05D001755 3.2e-15 87.0 343 34.4
BcaC03g16286 Brassica carinata HOM05D001789 ORTHO05D001755 4.2e-15 86.7 104 46.2
BolC1t01159H Brassica oleracea HOM05D001789 ORTHO05D001755 4.2e-15 86.7 107 48.6
BolC5t30026H Brassica oleracea HOM05D001789 ORTHO05D001755 9.3e-15 85.5 107 47.7
TAR636G0648 Trochodendron aralioides HOM05D001789 ORTHO05D001755 9.3e-15 85.5 157 36.3
PGSC0003DMG400019460 Solanum tuberosum HOM05D001789 ORTHO05D001755 1.2e-14 85.1 103 47.6
Psat0s1144g0080 Pisum sativum HOM05D001789 ORTHO05D001755 3.5e-14 83.6 101 46.5
BolC2t10099H Brassica oleracea HOM05D001789 ORTHO05D001755 6.0e-14 82.8 126 39.7
Solyc01g097190.4 Solanum lycopersicum HOM05D001789 ORTHO05D001755 1.3e-13 81.6 273 37.0
PSO421G0436 Papaver somniferum HOM05D001789 ORTHO05D001755 2.3e-13 80.9 263 28.1
Aqoxy2G03555 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 3.0e-13 80.5 227 28.2
Psat0s1144g0120 Pisum sativum HOM05D001789 ORTHO05D001755 3.0e-13 80.5 147 55.1
Os02g0493300 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 3.9e-13 80.1 254 28.0
BolC5t31927H Brassica oleracea HOM05D001789 ORTHO05D001755 6.7e-13 79.3 76 59.2
BcaB06g27267 Brassica carinata HOM05D001657 ORTHO05D001557 8.7e-13 79.0 87 52.9
BcaB06g27268 Brassica carinata HOM05D001657 ORTHO05D001557 8.7e-13 79.0 87 52.9
SalBow8G1668 Salvia bowleyana HOM05D001789 ORTHO05D001755 1.1e-12 78.6 280 26.8
Haze_04373 Corylus avellana HOM05D001789 ORTHO05D001755 2.5e-12 77.4 270 33.0
BcaC01g00159 Brassica carinata HOM05D001789 ORTHO05D001755 4.3e-12 76.6 48 77.1
C04p32670 Brassica napus HOM05D001789 ORTHO05D001755 4.3e-12 76.6 51 72.5
BcaC09g51561 Brassica carinata HOM05D000816 ORTHO05D001755 7.4e-12 75.9 53 71.7
Os12g0636100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 7.4e-12 75.9 221 29.4
PSO017G4288 Papaver somniferum HOM05D001789 ORTHO05D001755 9.6e-12 75.5 230 27.4
BcaC05g25403 Brassica carinata HOM05D001789 ORTHO05D001755 1.3e-11 75.1 75 61.3
CAN.G134.82 Capsicum annuum HOM05D001789 ORTHO05D001755 1.3e-11 75.1 82 54.9
Oeu016446.1 Olea europaea HOM05D001789 ORTHO05D000116 1.3e-11 75.1 149 45.6
C02p40820 Brassica napus HOM05D001789 ORTHO05D001755 2.8e-11 73.9 51 70.6
AagrBONN_evm.TU.Sc2ySwM_368.3405 Anthoceros agrestis HOM05D001789 ORTHO05D001755 3.7e-11 73.6 274 30.7
C01p11840 Brassica napus HOM05D001789 ORTHO05D001755 4.8e-11 73.2 57 68.4
PSO782G4634 Papaver somniferum HOM05D001789 ORTHO05D001755 4.8e-11 73.2 275 25.5
HanXRQChr14g0446601 Helianthus annuus HOM05D001789 ORTHO05D001755 6.2e-11 72.8 151 36.4
Os01g0171100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 6.2e-11 72.8 118 38.1
PSO017G4820 Papaver somniferum HOM05D001789 ORTHO05D001755 8.2e-11 72.4 236 39.8
PSO063G6555 Papaver somniferum HOM05D001789 ORTHO05D001755 8.2e-11 72.4 243 25.9
Solyc01g097200.1 Solanum lycopersicum HOM05D001789 ORTHO05D001755 8.2e-11 72.4 94 42.6
EL10Ac5g10456 Beta vulgaris HOM05D001789 ORTHO05D001755 1.8e-10 71.2 220 27.3
Os01g0189100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 5.3e-10 69.7 233 28.3
Zm00001eb356200 Zea mays HOM05D001789 ORTHO05D001755 5.3e-10 69.7 218 35.8
PSO170G3495 Papaver somniferum HOM05D001789 ORTHO05D001755 9.0e-10 68.9 263 27.0
PSO478G0068 Papaver somniferum HOM05D001789 ORTHO05D001755 9.0e-10 68.9 252 25.0
PSO675G3161 Papaver somniferum HOM05D001789 ORTHO05D001755 9.0e-10 68.9 256 34.8
PSO339G5673 Papaver somniferum HOM05D001789 ORTHO05D001755 1.5e-09 68.2 290 34.5
PSO832G3911 Papaver somniferum HOM05D001789 ORTHO05D001755 2.0e-09 67.8 233 39.1
BcaB01g00858 Brassica carinata HOM05D001789 ORTHO05D001755 2.6e-09 67.4 108 43.5
Zm00001eb405740 Zea mays HOM05D001789 ORTHO05D001755 3.4e-09 67.0 102 41.2
PSO675G2961 Papaver somniferum HOM05D001789 ORTHO05D001755 4.5e-09 66.6 230 37.8
Os03g0680200 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.0e-08 65.5 238 37.4
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.7e-08 64.7 229 25.8
PSO017G5894 Papaver somniferum HOM05D001789 ORTHO05D001755 1.7e-08 64.7 239 25.1
Aqoxy4G01760 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 2.9e-08 63.9 220 26.4
Sopen01g040890 Solanum pennellii HOM05D001789 ORTHO05D001755 3.8e-08 63.5 288 31.2
Os02g0492900 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 4.9e-08 63.2 117 36.8
PSO782G4460 Papaver somniferum HOM05D001789 ORTHO05D001755 4.9e-08 63.2 299 25.4
Migut.D00382 Erythranthe guttata HOM05D001789 ORTHO05D001755 6.5e-08 62.8 219 38.4
PSO384G2359 Papaver somniferum HOM05D001789 ORTHO05D001755 6.5e-08 62.8 120 35.8
PSO384G2589 Papaver somniferum HOM05D001789 ORTHO05D001755 1.1e-07 62.0 255 24.7
PSO384G0184 Papaver somniferum HOM05D001789 ORTHO05D001755 1.4e-07 61.6 246 28.0
Manes.05G085350 Manihot esculenta HOM05D001789 ORTHO05D001755 1.9e-07 61.2 223 24.7
vmacro14863 Vaccinium macrocarpon HOM05D001789 ORTHO05D001755 1.9e-07 61.2 183 28.4
COL.COLO4_03560 Corchorus olitorius HOM05D001789 ORTHO05D001755 2.5e-07 60.8 220 30.0
PSO081G0105 Papaver somniferum HOM05D001789 ORTHO05D001755 2.5e-07 60.8 220 37.3
Potri.005G054800 Populus trichocarpa HOM05D001789 ORTHO05D001755 2.5e-07 60.8 314 31.8
PSO675G3889 Papaver somniferum HOM05D001789 ORTHO05D001755 3.2e-07 60.5 229 37.6
PSO675G7970 Papaver somniferum HOM05D001789 ORTHO05D001755 3.2e-07 60.5 230 35.2
Peaxi162Scf00533g00068 Petunia axillaris HOM05D001789 ORTHO05D001755 3.2e-07 60.5 235 36.2
PSO675G1691 Papaver somniferum HOM05D001789 ORTHO05D001755 4.2e-07 60.1 230 23.0
A04p03140 Brassica napus HOM05D000205 ORTHO05D000438 5.5e-07 59.7 86 44.2
PSO339G0965 Papaver somniferum HOM05D001789 ORTHO05D001755 5.5e-07 59.7 304 24.7
arahy.Tifrunner.gnm1.ann1.JN9GN2 Arachis hypogaea HOM05D001789 ORTHO05D001755 7.1e-07 59.3 140 32.1
arahy.Tifrunner.gnm1.ann1.K1HEIP Arachis hypogaea HOM05D001789 ORTHO05D001755 7.1e-07 59.3 103 37.9
PSO478G4273 Papaver somniferum HOM05D001789 ORTHO05D001755 7.1e-07 59.3 262 37.8
PSO675G2205 Papaver somniferum HOM05D001789 ORTHO05D001755 7.1e-07 59.3 88 37.5
PSO729G0190 Papaver somniferum HOM05D001789 ORTHO05D001755 7.1e-07 59.3 246 25.2
Os02g0491900 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.2e-06 58.5 243 35.0
Os02g0493050 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.2e-06 58.5 228 34.6
PSO017G4575 Papaver somniferum HOM05D001789 ORTHO05D001755 1.2e-06 58.5 239 38.5
PSO675G2171 Papaver somniferum HOM05D001789 ORTHO05D001755 1.2e-06 58.5 88 37.5
Actinidia18365 Actinidia chinensis HOM05D001789 ORTHO05D001755 1.6e-06 58.2 137 32.8
Cc01_g18750 Coffea canephora HOM05D001789 ORTHO05D001755 2.1e-06 57.8 230 23.9
Os03g0680400 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 2.1e-06 57.8 126 37.3
TPR.G7003 Trifolium pratense HOM05D001789 ORTHO05D001755 3.5e-06 57.0 60 46.7
PSO675G2350 Papaver somniferum HOM05D001789 ORTHO05D001755 4.6e-06 56.6 173 27.2
PSO675G8957 Papaver somniferum HOM05D001789 ORTHO05D001755 6.1e-06 56.2 162 40.1


User provided reference genes

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