Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 1.0e-42 176.4 92 100.0
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 4.2e-41 171.0 92 95.7
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 7.2e-41 170.2 92 95.7
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 2.7e-40 168.3 92 94.6
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 6.1e-40 167.2 92 92.4
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 7.9e-40 166.8 92 91.3
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 1.0e-39 166.4 92 90.2
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 1.0e-39 166.4 92 90.2
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 1.0e-39 166.4 92 90.2
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 1.0e-39 166.4 92 92.4
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 3.9e-39 164.5 92 89.1
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 1.5e-38 162.5 92 89.1
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 2.6e-38 161.8 92 89.1
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 2.6e-38 161.8 92 89.1
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 5.7e-30 134.0 92 79.3
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 2.2e-29 132.1 73 91.8
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 5.3e-28 127.5 92 76.1
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.3e-26 122.9 86 69.8
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.3e-26 122.9 86 69.8
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 1.3e-26 122.9 86 69.8
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 2.9e-26 121.7 84 71.4
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 1.1e-25 119.8 84 70.2
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 1.1e-25 119.8 84 70.2
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 1.5e-25 119.4 85 69.4
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 2.5e-25 118.6 84 69.0
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 4.2e-25 117.9 90 64.4
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 4.2e-25 117.9 86 67.4
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 4.2e-25 117.9 90 64.4
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 4.2e-25 117.9 84 70.2
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 4.2e-25 117.9 84 67.9
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 5.5e-25 117.5 84 67.9
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 5.5e-25 117.5 84 69.0
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 7.2e-25 117.1 84 67.9
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 7.2e-25 117.1 90 63.3
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 9.4e-25 116.7 91 67.0
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 9.4e-25 116.7 86 66.3
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 9.4e-25 116.7 86 66.3
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 1.2e-24 116.3 86 67.4
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 1.2e-24 116.3 84 66.7
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 2.1e-24 115.5 91 65.9
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.6e-24 114.8 86 66.3
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 3.6e-24 114.8 84 66.7
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 6.1e-24 114.0 84 67.9
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 6.1e-24 114.0 85 65.9
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 1.0e-23 113.2 82 67.1
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 1.0e-23 113.2 82 67.1
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 1.0e-23 113.2 85 65.9
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.0e-23 113.2 90 62.2
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 1.0e-23 113.2 84 66.7
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 1.4e-23 112.8 86 64.0
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 1.8e-23 112.5 84 65.5
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.8e-23 112.5 90 61.1
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 2.3e-23 112.1 84 65.5
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 3.0e-23 111.7 84 65.5
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 4.0e-23 111.3 81 67.9
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 4.0e-23 111.3 80 70.0
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 5.2e-23 110.9 87 66.7
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 5.2e-23 110.9 88 62.5
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 6.8e-23 110.5 81 67.9
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 6.8e-23 110.5 84 65.5
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 6.8e-23 110.5 86 62.8
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 6.8e-23 110.5 84 64.3
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 8.8e-23 110.2 82 68.3
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 1.2e-22 109.8 82 65.9
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 1.2e-22 109.8 84 64.3
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.2e-22 109.8 84 65.5
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.5e-22 109.4 84 65.5
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 1.5e-22 109.4 87 60.9
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 1.5e-22 109.4 82 68.3
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 2.0e-22 109.0 84 65.5
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 2.0e-22 109.0 84 61.9
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 2.0e-22 109.0 84 64.3
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 2.6e-22 108.6 82 65.9
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 2.6e-22 108.6 82 65.9
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 3.4e-22 108.2 84 63.1
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 3.4e-22 108.2 80 68.8
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 4.4e-22 107.8 84 59.5
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 5.7e-22 107.5 84 63.1
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 5.7e-22 107.5 85 63.5
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 7.5e-22 107.1 84 63.1
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 9.8e-22 106.7 84 60.7
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 1.7e-21 105.9 84 61.9
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 1.7e-21 105.9 82 63.4
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 3.7e-21 104.8 84 60.7
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 3.7e-21 104.8 84 59.5
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 3.7e-21 104.8 84 58.3
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 4.8e-21 104.4 84 58.3
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 6.3e-21 104.0 84 61.9
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 8.3e-21 103.6 87 62.1
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 8.3e-21 103.6 81 61.7
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 1.1e-20 103.2 83 60.2
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 1.4e-20 102.8 84 59.5
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 1.4e-20 102.8 84 59.5
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 2.4e-20 102.1 81 59.3
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 3.1e-20 101.7 81 59.3
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 3.1e-20 101.7 84 58.3
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 3.1e-20 101.7 80 63.8
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 4.1e-20 101.3 84 58.3
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 4.1e-20 101.3 82 58.5
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 7.0e-20 100.5 72 68.1
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 9.1e-20 100.1 85 55.3
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 9.1e-20 100.1 78 64.1
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 1.6e-19 99.4 82 58.5
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 2.0e-19 99.0 87 58.6
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 7.7e-19 97.1 82 56.1
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 5.0e-18 94.4 82 54.9
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 5.0e-18 94.4 70 65.7
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 2.5e-17 92.0 87 51.7
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 7.2e-17 90.5 84 50.0
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 1.8e-15 85.9 77 53.2
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 1.7e-13 79.3 67 59.7
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 2.8e-13 78.6 58 63.8
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 7.0e-12 73.9 85 43.5
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 2.7e-11 72.0 82 48.8
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 2.7e-11 72.0 49 69.4
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 3.8e-10 68.2 58 60.3
Psat0s466g0120 Pisum sativum HOM05D006477 ORTHO05D008311 5.0e-10 67.8 58 58.6
Psat7g168960 Pisum sativum HOM05D006477 ORTHO05D008311 1.5e-09 66.2 58 56.9
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 1.6e-08 62.8 47 63.8
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 6.1e-08 60.8 66 50.0
C02p23080 Brassica napus HOM05D046150 ORTHO05D042944 8.0e-08 60.5 31 90.3
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 2.3e-07 58.9 58 51.7
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 6.8e-07 57.4 45 57.8
BolC2t08450H Brassica oleracea HOM05D046150 ORTHO05D042944 2.0e-06 55.8 31 83.9


User provided reference genes

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