Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.5e-178 628.6 310 100.0
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 5.7e-167 590.9 310 92.9
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 9.8e-167 590.1 310 92.6
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 7.8e-164 580.5 310 91.0
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 5.2e-160 567.8 307 88.9
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 1.2e-159 566.6 310 89.0
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 2.6e-159 565.5 306 89.2
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 3.4e-159 565.1 304 89.5
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 4.4e-159 564.7 311 88.4
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 4.4e-159 564.7 311 88.4
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 5.8e-159 564.3 306 88.9
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 6.4e-158 560.8 306 88.6
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.9e-157 559.3 311 86.5
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 9.5e-154 547.0 311 86.5
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.4e-149 532.3 310 81.6
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 4.1e-149 531.6 310 81.0
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 4.3e-146 521.5 310 79.7
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 3.8e-134 481.9 313 76.0
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 5.4e-133 478.0 310 74.2
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.1e-132 476.1 310 73.5
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 5.1e-131 471.5 310 72.9
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 2.5e-130 469.2 310 73.9
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.1e-128 463.8 305 72.8
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 4.0e-128 461.8 310 73.2
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 2.6e-127 459.1 310 70.6
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 2.6e-127 459.1 310 73.5
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 9.9e-127 457.2 310 71.0
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 1.7e-126 456.4 310 69.4
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 1.7e-126 456.4 310 69.7
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 2.2e-126 456.1 310 72.6
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 3.8e-126 455.3 310 69.7
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.4e-125 453.4 310 71.9
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.4e-125 453.4 310 71.9
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 1.4e-125 453.4 311 71.4
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 3.2e-125 452.2 315 71.7
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 3.2e-125 452.2 310 72.3
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.6e-124 449.9 310 72.3
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 2.7e-124 449.1 309 70.6
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 4.6e-124 448.4 310 71.3
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 4.6e-124 448.4 310 70.0
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 6.0e-124 448.0 310 69.7
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 1.3e-123 446.8 310 70.0
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 1.8e-123 446.4 310 69.4
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 2.3e-123 446.0 312 71.2
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 3.9e-123 445.3 310 70.3
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 3.9e-123 445.3 310 69.7
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 5.1e-123 444.9 304 71.1
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 6.7e-123 444.5 310 70.0
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 6.7e-123 444.5 308 69.2
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 8.7e-123 444.1 307 69.1
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 8.7e-123 444.1 307 71.3
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 1.1e-122 443.7 307 69.4
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 1.1e-122 443.7 316 70.3
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 1.1e-122 443.7 307 69.1
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 2.5e-122 442.6 310 69.7
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 4.3e-122 441.8 311 68.8
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 5.6e-122 441.4 310 70.0
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.3e-121 440.3 311 69.1
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 2.1e-121 439.5 305 69.8
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 3.7e-121 438.7 310 68.7
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 3.7e-121 438.7 309 68.0
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 3.7e-121 438.7 310 68.1
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 3.7e-121 438.7 308 67.9
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 4.8e-121 438.3 310 69.4
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 4.8e-121 438.3 307 68.4
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 6.2e-121 438.0 307 68.7
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.1e-120 437.2 310 69.7
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 1.8e-120 436.4 305 70.2
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 6.9e-120 434.5 318 67.9
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 9.0e-120 434.1 307 67.1
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 9.0e-120 434.1 305 67.9
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 2.6e-119 432.6 310 67.4
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 3.4e-119 432.2 305 67.2
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 3.4e-119 432.2 312 67.6
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 5.8e-119 431.4 305 67.5
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.2e-118 429.5 309 67.0
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 3.8e-118 428.7 326 64.4
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 8.4e-118 427.6 305 68.9
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 1.1e-117 427.2 326 65.3
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 1.1e-117 427.2 310 66.5
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 1.4e-117 426.8 305 66.2
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 7.1e-117 424.5 305 67.9
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 2.1e-116 422.9 307 67.1
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 2.7e-116 422.5 307 68.1
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 2.7e-116 422.5 305 67.9
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 1.1e-114 417.2 305 67.9
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 3.3e-114 415.6 290 69.3
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 3.3e-114 415.6 354 59.0
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 8.2e-113 411.0 328 61.0
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 3.1e-112 409.1 388 55.4
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 3.4e-111 405.6 272 71.3
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 3.4e-111 405.6 306 67.0
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 6.5e-110 401.4 347 60.8
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 6.5e-110 401.4 308 63.3
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.9e-109 399.8 312 63.5
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 1.3e-107 393.7 302 63.6
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 9.3e-101 370.9 310 60.6
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 7.9e-100 367.9 281 65.8
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 3.9e-99 365.5 245 71.4
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 3.9e-99 365.5 307 59.9
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.5e-98 363.6 240 71.7
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 7.4e-98 361.3 251 70.9
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 9.7e-98 360.9 285 62.5
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 5.0e-94 348.6 310 60.0
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.1e-93 347.4 241 66.8
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 2.0e-90 336.7 301 56.1
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 1.5e-82 310.5 305 54.8
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 3.7e-81 305.8 206 68.4
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 3.7e-81 305.8 211 66.8
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 1.4e-80 303.9 305 51.8
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.9e-77 293.5 304 52.6
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 3.1e-64 249.6 292 44.9
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.1e-56 223.0 148 73.0
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.0e-54 218.0 181 58.6
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 1.7e-54 217.2 291 41.2
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.1e-53 214.5 146 72.6
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 2.5e-53 213.4 319 41.7
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 1.2e-50 204.5 159 63.5
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.5e-37 161.0 184 50.5
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 2.8e-36 156.8 149 54.4
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 4.4e-34 149.4 149 51.0
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 5.6e-29 132.5 122 57.4
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 8.1e-28 128.6 99 66.7
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 5.8e-26 122.5 96 58.3
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.7e-17 94.4 85 56.5
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.7e-17 94.4 67 62.7
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.8e-17 93.2 67 62.7
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.3e-14 84.7 66 63.6
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 8.7e-14 82.0 61 65.6


User provided reference genes

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