Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.3e-100 369.8 188 100.0
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.6e-87 326.2 197 86.3
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 6.7e-86 320.9 197 85.3
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.0e-81 307.0 194 84.0
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.0e-78 297.0 193 78.2
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 4.0e-78 295.0 192 78.6
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 3.7e-76 288.5 197 73.6
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 7.0e-75 284.3 195 75.4
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 7.0e-75 284.3 198 73.7
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 4.2e-72 275.0 195 74.4
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 9.4e-72 273.9 195 73.8
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.6e-71 273.1 197 74.6
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.6e-71 273.1 195 73.8
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 4.7e-71 271.6 195 73.3
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 5.7e-61 238.0 200 63.0
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 7.5e-61 237.7 190 62.6
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.7e-60 236.5 187 64.7
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 2.8e-60 235.7 187 64.7
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 2.8e-60 235.7 187 64.7
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.8e-60 235.7 192 63.5
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 2.4e-59 232.6 185 62.7
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 2.4e-59 232.6 190 62.1
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 7.0e-59 231.1 197 62.9
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 9.2e-59 230.7 187 62.0
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 5.9e-58 228.0 190 61.1
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 2.3e-57 226.1 200 59.0
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 6.6e-57 224.6 198 60.6
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 8.6e-57 224.2 204 58.3
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.5e-56 223.4 198 60.1
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.9e-56 223.0 197 61.4
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.5e-56 222.6 204 57.8
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 4.3e-56 221.9 194 58.2
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 4.3e-56 221.9 197 58.9
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.6e-56 221.5 190 61.1
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 5.6e-56 221.5 198 61.1
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 7.3e-56 221.1 190 60.0
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 9.5e-56 220.7 200 58.0
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 1.2e-55 220.3 200 58.5
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 2.1e-55 219.5 190 60.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.1e-55 219.5 197 60.9
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.8e-55 219.2 204 57.4
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 2.8e-55 219.2 198 59.6
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.0e-55 217.6 201 58.2
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.8e-54 216.5 188 60.1
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.0e-54 215.7 191 59.2
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 4.0e-54 215.3 192 57.8
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 6.8e-54 214.5 190 57.9
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 6.8e-54 214.5 199 59.3
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 8.9e-54 214.2 188 58.5
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 1.2e-53 213.8 195 57.4
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.5e-53 213.4 188 58.5
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.5e-53 213.4 193 58.5
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 3.4e-53 212.2 203 56.7
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 5.7e-53 211.5 196 58.7
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 7.5e-53 211.1 192 57.8
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 9.8e-53 210.7 191 58.1
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.7e-52 209.9 191 56.5
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 2.2e-52 209.5 192 55.7
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 2.9e-52 209.1 192 57.8
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 6.4e-52 208.0 192 55.7
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 8.3e-52 207.6 193 55.4
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 1.1e-51 207.2 194 57.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.4e-51 206.8 200 57.5
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.8e-51 206.5 192 57.3
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.8e-51 206.5 180 56.1
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 3.2e-51 205.7 209 55.5
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 3.2e-51 205.7 192 55.7
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 4.1e-51 205.3 192 56.2
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 7.0e-51 204.5 179 58.1
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 7.0e-51 204.5 207 55.1
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 9.2e-51 204.1 198 58.6
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 9.2e-51 204.1 193 56.0
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.2e-50 203.8 192 53.6
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.6e-50 203.4 196 59.2
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.6e-50 203.4 193 52.3
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 1.6e-50 203.4 170 61.8
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 2.0e-50 203.0 201 54.2
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 2.0e-50 203.0 181 58.0
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 2.0e-50 203.0 190 58.9
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.0e-50 203.0 192 55.2
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 2.0e-50 203.0 185 59.5
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 2.7e-50 202.6 198 58.6
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.6e-50 201.8 185 58.9
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.6e-50 201.8 184 58.7
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 7.8e-50 201.1 201 54.2
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 7.8e-50 201.1 184 56.5
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 7.8e-50 201.1 192 54.7
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.7e-49 199.9 187 57.2
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.3e-49 199.5 192 53.6
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 6.6e-49 198.0 201 53.2
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 4.3e-48 195.3 183 56.3
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 5.6e-48 194.9 204 54.4
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 2.1e-47 193.0 204 53.9
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.1e-47 193.0 170 58.2
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 3.6e-47 192.2 211 52.1
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 4.7e-47 191.8 186 56.5
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 6.2e-47 191.4 205 53.7
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 8.0e-47 191.0 195 56.4
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 5.2e-46 188.3 182 55.5
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 5.2e-46 188.3 193 50.8
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.2e-45 187.2 188 52.7
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 4.4e-45 185.3 194 54.1
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 6.4e-44 181.4 191 53.9
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 3.2e-43 179.1 187 51.3
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 4.1e-43 178.7 181 51.4
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.4e-43 178.3 148 62.2
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 1.6e-42 176.8 181 50.8
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 7.8e-42 174.5 198 54.0
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 6.6e-41 171.4 146 58.9
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 6.6e-41 171.4 191 50.3
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.9e-40 169.9 289 38.8
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 2.5e-40 169.5 251 43.0
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 4.3e-40 168.7 186 51.6
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 5.6e-40 168.3 197 50.8
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.2e-39 167.2 192 50.0
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 4.0e-38 162.2 158 53.8
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 6.8e-38 161.4 156 55.8
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.5e-37 160.2 143 55.9
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 5.8e-37 158.3 181 48.6
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.3e-36 157.1 166 51.2
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 8.3e-36 154.5 125 56.8
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.1e-35 154.1 179 48.6
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 4.1e-35 152.1 177 48.6
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 4.1e-35 152.1 193 45.6
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.1e-34 149.8 193 45.1
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 6.0e-34 148.3 195 47.7
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 1.0e-33 147.5 177 47.5
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 9.5e-32 141.0 157 51.0
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.6e-31 140.2 115 64.3
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.6e-31 140.2 115 64.3
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 2.2e-28 129.8 101 59.4
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 6.0e-26 121.7 147 43.5
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.5e-24 116.3 102 57.8
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 5.6e-24 115.2 124 42.7
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 7.3e-24 114.8 124 45.2
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.1e-23 111.3 101 52.5
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.2e-21 107.5 185 41.6
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 1.5e-21 107.1 130 50.8
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.2e-18 97.4 150 42.7
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.7e-18 96.3 156 39.1
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 6.0e-18 95.1 127 42.5
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 3.9e-17 92.4 94 54.3
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 2.5e-16 89.7 90 54.4
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.6e-15 87.0 90 54.4
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.8e-15 85.5 113 40.7
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.4e-14 84.0 117 47.0
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.8e-14 83.6 154 36.4
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.2e-11 72.4 53 69.8
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 7.1e-11 71.6 65 55.4
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 6.0e-10 68.6 65 53.8
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.8e-09 67.0 180 27.8
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 3.9e-09 65.9 100 45.0
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.1e-08 64.3 103 44.7
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.9e-08 63.5 102 41.2
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 2.5e-08 63.2 56 58.9
AL7G43980 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 9.6e-08 61.2 44 72.7


User provided reference genes

Program Settings