Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 2.6e-264 914.8 468 100.0
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 5.5e-222 774.2 474 84.4
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 1.2e-216 756.5 478 81.0
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 5.0e-215 751.1 477 81.8
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 5.0e-215 751.1 477 81.8
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 3.7e-210 734.9 468 82.3
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.6e-208 729.6 473 82.0
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 3.5e-208 728.4 471 78.3
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 4.5e-208 728.0 471 78.1
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 4.5e-208 728.0 471 78.1
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 3.1e-204 715.3 469 78.3
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 4.4e-203 711.4 469 77.8
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 2.4e-201 705.7 471 77.3
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.3e-183 646.0 426 76.3
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 1.7e-178 629.8 479 67.2
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 3.3e-150 535.8 484 56.2
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 2.2e-138 496.5 485 54.2
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 4.2e-137 492.3 489 55.0
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 2.1e-136 490.0 491 53.6
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 6.1e-136 488.4 455 56.7
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.3e-133 480.7 498 54.4
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.7e-133 480.3 488 53.3
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 2.8e-133 479.6 505 53.7
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 3.7e-133 479.2 485 52.8
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 3.1e-132 476.1 496 54.0
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.5e-131 473.8 484 52.3
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 2.0e-131 473.4 477 52.4
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 4.5e-131 472.2 495 52.5
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 7.7e-131 471.5 424 57.8
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 7.2e-129 464.9 495 53.5
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 7.2e-129 464.9 456 54.8
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 7.2e-129 464.9 485 53.4
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 3.6e-128 462.6 487 51.5
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 6.1e-128 461.8 489 53.4
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 5.1e-127 458.8 466 53.0
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 6.7e-127 458.4 400 58.2
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 6.7e-127 458.4 424 56.8
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 1.3e-125 454.1 494 52.4
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 4.8e-125 452.2 443 55.8
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 4.8e-125 452.2 471 53.5
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 4.1e-124 449.1 427 56.0
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 5.3e-124 448.7 451 55.4
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.2e-123 447.6 486 52.1
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 5.9e-123 445.3 491 52.3
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 7.7e-123 444.9 428 56.3
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 1.3e-122 444.1 431 55.0
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 5.0e-122 442.2 493 48.5
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 1.5e-121 440.7 406 60.8
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 2.5e-121 439.9 391 57.0
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 3.2e-121 439.5 445 52.8
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 2.7e-120 436.4 439 50.6
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 6.1e-120 435.3 442 50.5
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 8.0e-120 434.9 442 50.7
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 1.0e-119 434.5 419 54.7
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 2.3e-119 433.3 417 55.9
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 3.0e-119 433.0 436 52.1
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 5.2e-119 432.2 417 54.0
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 2.0e-118 430.3 440 51.1
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 5.7e-118 428.7 431 52.2
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 9.7e-118 427.9 456 50.9
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 1.1e-116 424.5 494 48.2
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 2.4e-116 423.3 479 49.7
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 5.3e-116 422.2 433 52.4
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 3.5e-115 419.5 379 55.9
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 2.2e-114 416.8 434 50.9
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 8.5e-114 414.8 429 52.2
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.1e-113 414.5 486 50.8
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 4.2e-113 412.5 432 50.7
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 4.2e-113 412.5 400 54.5
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 5.5e-113 412.1 437 51.0
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 7.2e-113 411.8 469 48.2
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 2.1e-112 410.2 455 49.5
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 4.7e-112 409.1 406 56.2
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 4.7e-112 409.1 401 53.6
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 8.0e-112 408.3 449 51.2
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 3.0e-111 406.4 444 50.0
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 8.8e-111 404.8 438 48.9
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 1.7e-109 400.6 467 48.4
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 2.8e-109 399.8 358 57.8
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 7.0e-108 395.2 416 51.2
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.1e-108 394.8 357 56.9
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.1e-108 394.8 357 56.9
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 2.2e-106 390.2 408 52.7
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.5e-105 387.5 353 57.5
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.7e-101 374.0 409 52.3
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 8.3e-101 371.7 351 55.0
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 8.3e-101 371.7 428 47.4
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 5.4e-100 369.0 398 47.5
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 9.5e-97 358.2 331 55.0
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 1.6e-96 357.5 363 52.9
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 3.3e-89 333.2 348 52.6
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 5.6e-89 332.4 428 43.0
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 7.8e-83 312.0 339 51.3
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 5.0e-82 309.3 323 54.2
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 3.5e-75 286.6 267 53.2
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 3.0e-66 256.9 455 35.2
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 3.9e-58 229.9 384 37.2
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 4.8e-56 223.0 445 32.4
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 1.5e-54 218.0 180 59.4
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 3.4e-54 216.9 308 43.8
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 4.2e-52 209.9 357 36.1
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 8.7e-50 202.2 193 53.4
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 8.4e-45 185.7 294 43.9
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 1.4e-44 184.9 483 30.0
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 4.5e-38 163.3 362 33.1
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.5e-33 148.3 169 52.7
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.4e-31 141.0 171 49.1
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 6.9e-31 139.4 196 40.8
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.3e-29 135.2 174 47.1
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 2.3e-10 71.2 103 41.7
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 6.3e-08 63.2 86 37.2
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 1.4e-07 62.0 61 52.5
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.6e-06 58.5 84 42.9
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.6e-06 58.5 86 39.5
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.5e-06 57.4 84 39.3
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 7.7e-06 56.2 87 40.2


User provided reference genes

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