Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 4.9e-224 780.8 389 100.0
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 1.7e-216 755.7 389 96.4
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 1.9e-212 742.3 390 94.6
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 4.0e-210 734.6 392 93.9
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 3.4e-209 731.5 392 93.4
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 7.9e-206 720.3 387 92.8
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 2.3e-205 718.8 383 93.7
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 3.0e-205 718.4 394 91.9
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.9e-204 715.7 394 91.4
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 7.9e-190 667.2 383 89.0
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 4.8e-187 657.9 392 85.2
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 6.3e-179 630.9 390 80.8
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 2.9e-176 622.1 392 82.1
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 5.0e-176 621.3 408 79.4
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 2.6e-156 555.8 393 69.7
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 2.0e-153 546.2 391 71.1
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.7e-152 543.1 410 68.0
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.8e-152 542.0 394 69.8
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.8e-152 542.0 394 69.8
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 1.5e-151 540.0 396 69.7
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 2.5e-151 539.3 389 70.4
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 7.2e-151 537.7 386 67.9
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 9.5e-151 537.3 393 66.9
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 1.6e-150 536.6 394 69.0
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 2.1e-150 536.2 395 68.6
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 2.1e-150 536.2 390 66.9
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 2.8e-150 535.8 410 67.6
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.8e-150 535.8 395 69.4
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 4.7e-150 535.0 388 69.8
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 6.1e-150 534.6 395 68.9
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 8.9e-149 530.8 394 69.0
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 1.2e-148 530.4 394 68.0
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 2.0e-148 529.6 394 68.0
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.6e-148 529.3 394 68.5
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.4e-148 528.9 394 68.3
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 4.4e-148 528.5 387 69.8
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 5.7e-148 528.1 394 68.0
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.3e-147 526.9 394 67.8
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 2.2e-147 526.2 396 66.7
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 2.2e-147 526.2 394 66.5
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 2.8e-147 525.8 396 66.9
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 3.7e-147 525.4 393 66.2
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 3.7e-147 525.4 394 67.3
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 6.3e-147 524.6 397 67.3
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 2.4e-146 522.7 396 66.9
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 2.4e-146 522.7 394 66.5
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.6e-145 520.0 397 66.5
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.0e-145 519.6 400 67.2
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 1.0e-144 517.3 390 66.4
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 1.3e-144 516.9 395 66.6
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 5.0e-144 515.0 393 66.9
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 6.6e-144 514.6 393 64.9
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 6.6e-144 514.6 392 66.8
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 8.6e-144 514.2 421 63.9
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 1.5e-143 513.5 396 64.1
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.5e-143 513.5 411 64.5
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.5e-143 513.5 393 65.1
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 1.5e-143 513.5 392 66.6
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.5e-143 513.5 396 67.2
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 3.3e-143 512.3 399 64.4
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 9.5e-143 510.8 394 66.5
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 2.8e-142 509.2 392 66.3
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 3.1e-141 505.8 408 64.7
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 8.9e-141 504.2 421 62.2
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.0e-140 503.1 395 64.8
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 1.3e-139 500.4 395 65.1
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 3.7e-139 498.8 395 64.3
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 4.9e-139 498.4 394 64.2
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 4.1e-138 495.4 390 63.1
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 9.2e-138 494.2 396 63.9
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 9.2e-138 494.2 395 64.8
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 4.6e-137 491.9 395 64.3
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 1.3e-136 490.3 394 64.7
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 1.7e-136 490.0 390 63.6
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.3e-136 489.6 399 63.7
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 3.9e-136 488.8 391 62.1
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 3.9e-136 488.8 396 64.6
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 6.6e-136 488.0 391 63.7
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 2.5e-135 486.1 389 65.0
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 7.3e-135 484.6 422 59.7
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 4.7e-134 481.9 394 63.7
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 1.4e-133 480.3 439 58.5
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 6.8e-133 478.0 385 62.9
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 7.5e-132 474.6 404 60.4
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.7e-131 473.4 387 63.6
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.4e-131 471.5 355 68.5
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.3e-131 471.1 394 62.9
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 7.1e-130 468.0 390 62.8
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 7.8e-129 464.5 396 61.1
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 3.9e-128 462.2 390 62.8
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 2.6e-124 449.5 384 60.2
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 2.3e-120 436.4 394 59.1
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 4.3e-119 432.2 427 55.3
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 1.4e-117 427.2 395 56.5
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.4e-117 426.4 387 58.4
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 4.0e-117 425.6 387 58.4
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 5.8e-116 421.8 389 57.6
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 6.4e-115 418.3 392 55.6
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.0e-112 411.0 411 55.7
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.3e-112 410.6 306 69.0
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 8.1e-110 401.4 396 54.0
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 9.9e-108 394.4 270 71.5
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 4.9e-107 392.1 380 54.2
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 3.5e-105 386.0 394 54.3
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 2.8e-102 376.3 374 54.8
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 4.8e-102 375.6 433 50.8
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.8e-101 373.6 395 53.2
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 3.4e-100 369.4 399 51.4
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 1.5e-95 354.0 305 62.0
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 2.0e-92 343.6 387 48.6
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 1.3e-86 324.3 296 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 3.7e-86 322.8 392 46.4
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.4e-85 320.1 422 47.4
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 4.1e-85 319.3 373 46.9
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 1.0e-75 288.1 414 42.0
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.1e-69 268.1 259 54.1
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 2.1e-65 253.8 229 53.7
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 1.7e-59 234.2 339 44.2
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 9.4e-58 228.4 353 43.1
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 5.7e-55 219.2 247 47.8
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 4.2e-50 203.0 155 63.9
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.2e-49 201.4 157 65.6
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.2e-32 142.9 110 66.4
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.5e-31 141.4 110 65.5
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.4e-31 140.2 110 65.5
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.8e-29 134.4 110 63.6
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 1.0e-27 128.6 116 62.1
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 1.6e-25 121.3 96 69.8
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 1.6e-25 121.3 125 48.8
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 2.8e-25 120.6 85 71.8
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 4.7e-25 119.8 93 60.2
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 1.1e-18 98.6 110 49.1
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 8.1e-17 92.4 79 57.0
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 6.8e-16 89.4 100 46.0
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 4.4e-15 86.7 64 70.3
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 3.7e-14 83.6 60 66.7
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 1.3e-11 75.1 378 24.9
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 8.6e-11 72.4 80 52.5
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 3.4e-07 60.5 65 47.7
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 7.6e-07 59.3 69 42.0
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.9e-07 58.9 49 59.2


User provided reference genes

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