Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0422 Capsella rubella HOM05D006894 ORTHO05D008724 6.1e-244 847.0 423 100.0
AL2G15470 Arabidopsis lyrata HOM05D006894 ORTHO05D008724 3.6e-228 794.7 421 93.8
AT1G60990 Arabidopsis thaliana HOM05D006894 ORTHO05D008724 3.0e-227 791.6 421 93.3
Thhalv10023478m.g Eutrema salsugineum HOM05D006894 ORTHO05D008724 7.0e-216 753.8 425 89.2
CARHR052050 Cardamine hirsuta HOM05D006894 ORTHO05D008724 1.0e-214 750.0 426 88.3
Sp2g03530 Schrenkiella parvula HOM05D006894 ORTHO05D008724 4.1e-208 728.0 425 86.1
C01p37610 Brassica napus HOM05D006894 ORTHO05D008724 1.6e-204 716.1 423 85.6
BcaC09g49347 Brassica carinata HOM05D006894 ORTHO05D008724 2.1e-204 715.7 422 85.8
A01p29780 Brassica napus HOM05D006894 ORTHO05D008724 5.7e-202 707.6 422 84.4
Aa31LG2G9600 Aethionema arabicum HOM05D006894 ORTHO05D008724 2.2e-201 705.7 438 82.4
BcaB04g20304 Brassica carinata HOM05D006894 ORTHO05D008724 7.1e-184 647.5 419 79.7
THA.LOC104809620 Tarenaya hassleriana HOM05D006894 ORTHO05D008724 2.4e-168 595.9 426 70.9
COL.COLO4_11781 Corchorus olitorius HOM05D006894 ORTHO05D008724 3.4e-162 575.5 400 70.5
Gohir.A03G193500 Gossypium hirsutum HOM05D006894 ORTHO05D008724 7.1e-160 567.8 415 67.0
Gorai.005G242400 Gossypium raimondii HOM05D006894 ORTHO05D008724 7.1e-160 567.8 415 67.5
Gohir.D02G214600 Gossypium hirsutum HOM05D006894 ORTHO05D008724 1.6e-159 566.6 415 67.5
MD08G1235500 Malus domestica HOM05D006894 ORTHO05D008724 6.0e-159 564.7 371 73.9
Thecc.02G114400 Theobroma cacao HOM05D006894 ORTHO05D008724 5.1e-158 561.6 421 65.6
Ciclev10001270m.g Citrus clementina HOM05D006894 ORTHO05D008724 1.9e-157 559.7 418 67.2
Duzib248G0689 Durio zibethinus HOM05D006894 ORTHO05D008724 1.9e-157 559.7 415 66.3
Cfa005507 Carpinus fangiana HOM05D006894 ORTHO05D008724 4.3e-157 558.5 363 73.0
GSVIVG01022874001 Vitis vinifera HOM05D006894 ORTHO05D008724 4.3e-157 558.5 389 71.0
QL02p099211 Quercus lobata HOM05D006894 ORTHO05D008724 2.1e-156 556.2 368 71.7
Atru.chr6.614 Acer truncatum HOM05D006894 ORTHO05D008724 3.7e-156 555.4 433 65.4
Atru.chr6.599 Acer truncatum HOM05D006894 ORTHO05D008724 6.2e-156 554.7 433 65.1
PSO528G0189 Papaver somniferum HOM05D006894 ORTHO05D008724 1.8e-155 553.1 367 72.5
CiPaw.05G048800 Carya illinoinensis HOM05D006894 ORTHO05D008724 4.0e-155 552.0 369 70.7
TWI14G1412 Tripterygium wilfordii HOM05D006894 ORTHO05D008724 1.5e-154 550.1 363 72.2
CANSAT11G1074 Cannabis sativa HOM05D006894 ORTHO05D008724 4.5e-154 548.5 410 67.1
Prupe.1G571400 Prunus persica HOM05D006894 ORTHO05D008724 4.5e-154 548.5 369 72.1
TAR628G1558 Trochodendron aralioides HOM05D006894 ORTHO05D008724 5.8e-154 548.1 366 73.5
CAN.G798.8 Capsicum annuum HOM05D006894 ORTHO05D008724 1.3e-153 547.0 385 69.9
PSO170G1552 Papaver somniferum HOM05D006894 ORTHO05D008724 1.3e-153 547.0 395 68.1
TPR.G23092 Trifolium pratense HOM05D006894 ORTHO05D008724 8.4e-153 544.3 407 66.3
Glyma.05G168900 Glycine max HOM05D006894 ORTHO05D008724 1.9e-152 543.1 404 65.6
Manes.07G017700 Manihot esculenta HOM05D006894 ORTHO05D008724 5.5e-152 541.6 438 63.0
Phvul.002G249600 Phaseolus vulgaris HOM05D006894 ORTHO05D008724 5.5e-152 541.6 393 66.7
Lalb_Chr12g0204471 Lupinus albus HOM05D006894 ORTHO05D008724 1.2e-151 540.4 365 70.1
arahy.Tifrunner.gnm1.ann1.7VS6FJ Arachis hypogaea HOM05D006894 ORTHO05D008724 1.6e-151 540.0 374 70.1
Nitab4.5_0000816g0080 Nicotiana tabacum HOM05D006894 ORTHO05D008724 1.6e-151 540.0 375 69.9
Psat7g062040 Pisum sativum HOM05D006894 ORTHO05D008724 2.1e-151 539.7 372 70.7
VMungo0251G0921 Vigna mungo HOM05D006894 ORTHO05D008724 2.1e-151 539.7 403 66.0
Solyc01g104060.3 Solanum lycopersicum HOM05D006894 ORTHO05D008724 2.7e-151 539.3 368 70.4
arahy.Tifrunner.gnm1.ann1.NZQI89 Arachis hypogaea HOM05D006894 ORTHO05D008724 4.6e-151 538.5 390 68.2
Sopen01g046470 Solanum pennellii HOM05D006894 ORTHO05D008724 4.6e-151 538.5 368 70.4
RcHm_v2.0_Chr7g0221781 Rosa chinensis HOM05D006894 ORTHO05D008724 6.0e-151 538.1 422 63.7
Nn1g08851 Nelumbo nucifera HOM05D006894 ORTHO05D008724 7.9e-151 537.7 370 70.3
FAN08G3638 Fragaria x ananassa HOM05D006894 ORTHO05D008724 1.3e-150 537.0 376 69.9
HanXRQChr09g0249011 Helianthus annuus HOM05D006894 ORTHO05D008724 1.9e-149 533.1 367 70.3
Aqoxy6G00238 Aquilegia oxysepala HOM05D006894 ORTHO05D008724 7.4e-149 531.2 372 69.6
CsaV3_6G037480 Cucumis sativus L. HOM05D006894 ORTHO05D008724 7.4e-149 531.2 368 70.9
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 7.4e-149 531.2 369 69.1
Ca_17824_v3 Cicer arietinum L. HOM05D006894 ORTHO05D008724 2.1e-148 529.6 368 69.6
ECA240G3758 Erigeron canadensis HOM05D006894 ORTHO05D008724 6.2e-148 528.1 377 67.9
Medtr8g088790 Medicago truncatula HOM05D006894 ORTHO05D008724 1.1e-147 527.3 374 68.7
Nitab4.5_0010336g0030 Nicotiana tabacum HOM05D006894 ORTHO05D008724 9.0e-147 524.2 371 69.3
Eucgr.G00568 Eucalyptus grandis HOM05D006894 ORTHO05D008724 2.6e-146 522.7 358 70.7
Peaxi162Scf00017g02640 Petunia axillaris HOM05D006894 ORTHO05D008724 5.8e-146 521.5 347 72.9
Lj9A304G82 Lonicera japonica HOM05D006894 ORTHO05D008724 3.8e-145 518.8 415 63.9
Migut.B00823 Erythranthe guttata HOM05D006894 ORTHO05D008724 1.9e-144 516.5 387 66.1
PGSC0003DMG400023767 Solanum tuberosum HOM05D006894 ORTHO05D008724 1.9e-141 506.5 388 65.5
Lj4g0002387 Lotus japonicus HOM05D006894 ORTHO05D008724 4.3e-141 505.4 344 70.9
Peaxi162Scf00011g00531 Petunia axillaris HOM05D006894 ORTHO05D008724 4.3e-141 505.4 379 66.8
Oeu027798.1 Olea europaea HOM05D006894 ORTHO05D008724 7.4e-141 504.6 359 68.5
Sed0001229 Sechium edule HOM05D006894 ORTHO05D008724 1.3e-140 503.8 346 72.0
vmacro01754 Vaccinium macrocarpon HOM05D006894 ORTHO05D008724 8.2e-140 501.1 411 61.1
CDE08G1218 Ceratophyllum demersum HOM05D006894 ORTHO05D008724 1.7e-137 493.4 375 64.5
BolC1t03726H Brassica oleracea HOM05D006894 ORTHO05D008724 2.9e-137 492.7 291 85.6
DCAR_006702 Daucus carota HOM05D006894 ORTHO05D008724 2.9e-137 492.7 372 64.0
Sc15g0002580 Simmondsia chinensis HOM05D006894 ORTHO05D008724 8.5e-137 491.1 395 62.3
MSTRG.20303 Avicennia marina HOM05D006894 ORTHO05D008724 3.2e-136 489.2 364 66.8
FAN18G4164 Fragaria x ananassa HOM05D006894 ORTHO05D008724 2.1e-135 486.5 414 61.1
Cc02_g22630 Coffea canephora HOM05D006894 ORTHO05D008724 1.0e-134 484.2 360 67.2
ATR0665G083 Amborella trichopoda HOM05D006894 ORTHO05D008724 3.0e-134 482.6 381 60.6
BraA01t03106Z Brassica rapa HOM05D006894 ORTHO05D008724 5.1e-134 481.9 290 83.4
FAN04G0479 Fragaria x ananassa HOM05D006894 ORTHO05D008724 1.1e-133 480.7 378 65.1
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 1.1e-133 480.7 408 60.5
FvH4_5g29120 Fragaria vesca HOM05D006894 ORTHO05D008724 4.3e-133 478.8 376 64.1
MBI06_g01072_MAGBIO Magnolia biondii HOM05D006894 ORTHO05D008724 3.7e-132 475.7 477 54.5
Actinidia39033 Actinidia chinensis HOM05D006894 ORTHO05D008724 2.6e-130 469.5 351 66.4
Rhsim11G0128300 Rhododendron simsii HOM05D006894 ORTHO05D008724 1.4e-128 463.8 393 60.1
SEGI_07604 Sequoiadendron giganteum HOM05D006894 ORTHO05D008724 7.9e-127 458.0 355 60.6
Actinidia30531 Actinidia chinensis HOM05D006894 ORTHO05D008724 5.3e-123 445.3 355 63.1
Dinv19376 Davidia involucrata HOM05D006894 ORTHO05D008724 2.7e-119 433.0 284 73.2
Mapoly0039s0108 Marchantia polymorpha HOM05D006894 ORTHO05D008724 4.8e-116 422.2 358 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1590 Anthoceros agrestis HOM05D006894 ORTHO05D007218 3.1e-115 419.5 357 56.9
MELO3C014368.2 Cucumis melo HOM05D006894 ORTHO05D008724 3.1e-107 392.9 379 55.9
Pp3c9_20800 Physcomitrium patens HOM05D006894 ORTHO05D008724 7.7e-106 388.3 359 53.2
Haze_01731 Corylus avellana HOM05D006894 ORTHO05D008724 2.2e-105 386.7 432 50.0
SMO119G0367 Selaginella moellendorffii HOM05D006894 ORTHO05D008724 4.4e-101 372.5 345 52.8
FAN13G2283 Fragaria x ananassa HOM05D006894 ORTHO05D008724 1.6e-95 354.0 374 52.1
CBR_g30837 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-95 353.6 347 51.0
CSS0024184 Camellia sinensis var. sinensis HOM05D006894 ORTHO05D008724 1.7e-92 344.0 369 50.9
unitig_749.g14128 Utricularia gibba HOM05D006894 ORTHO05D008724 7.3e-88 328.6 286 57.7
SEGI_10844 Sequoiadendron giganteum HOM05D006894 ORTHO05D008724 5.8e-77 292.4 316 48.7
Cre12.g552850 Chlamydomonas reinhardtii HOM05D006894 ORTHO05D008724 2.6e-61 240.4 381 37.0
Rhsim09G0048600 Rhododendron simsii HOM05D006894 ORTHO05D008724 1.1e-59 235.0 376 40.7
Cpa.g.sc30.18 Carica papaya HOM05D006894 ORTHO05D008724 2.3e-49 200.7 141 70.9
BcaB01g03502 Brassica carinata HOM05D006894 ORTHO05D008724 6.6e-49 199.1 133 78.2
ClCG09G014030 Citrullus lanatus HOM05D006894 ORTHO05D008724 9.9e-45 185.3 130 68.5
BcaB05g23073 Brassica carinata HOM05D006894 ORTHO05D008724 1.4e-43 181.4 108 81.5
Rhsim09G0016000 Rhododendron simsii HOM05D006894 ORTHO05D008724 1.3e-36 158.3 188 45.7
BcaB02g10691 Brassica carinata HOM05D000189 ORTHO05D000474 6.4e-36 156.0 126 67.5
Cpa.g.sc30.19 Carica papaya HOM05D006894 ORTHO05D008724 6.5e-28 129.4 112 57.1
Pp3c5_7230 Physcomitrium patens HOM05D006894 ORTHO05D008724 4.8e-23 113.2 192 38.5
ClCG09G014040 Citrullus lanatus HOM05D006894 ORTHO05D008724 1.8e-22 111.3 79 64.6
Solyc09g015460.3 Solanum lycopersicum HOM05D006894 ORTHO05D008724 4.2e-19 100.1 60 75.0
Duzib052G1224 Durio zibethinus HOM05D006894 ORTHO05D008724 5.5e-19 99.8 147 41.5
PRCOL_00004673 Prasinoderma coloniale HOM05D006894 ORTHO05D008724 5.1e-17 93.2 350 26.6
unitig_749.g14127 Utricularia gibba HOM05D006894 ORTHO05D008724 5.1e-17 93.2 78 59.0
Glyma.08G127500 Glycine max HOM05D006894 ORTHO05D008724 3.3e-16 90.5 96 46.9
ClCG09G014050 Citrullus lanatus HOM05D006894 ORTHO05D008724 1.7e-15 88.2 64 64.1
CAN.G798.10 Capsicum annuum HOM05D006894 ORTHO05D008724 9.1e-14 82.4 179 32.4
Peaxi162Scf01350g00016 Petunia axillaris HOM05D006894 ORTHO05D008724 2.2e-12 77.8 52 73.1
Cpa.g.sc3656.1 Carica papaya HOM05D006894 ORTHO05D008724 2.5e-11 74.3 76 56.6
CDE06G1775 Ceratophyllum demersum HOM05D006894 ORTHO05D008724 2.3e-09 67.8 55 58.2
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 1.1e-08 65.5 329 24.6
MCO09G354 Micromonas commoda HOM05D006894 ORTHO05D008724 4.1e-06 57.0 269 23.8


User provided reference genes

Program Settings