Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 2.4e-134 482.3 254 100.0
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.3e-113 413.3 254 88.2
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.3e-113 412.5 254 88.6
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 3.8e-92 342.0 250 78.4
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 1.6e-85 320.1 254 74.4
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 4.5e-85 318.5 254 74.0
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 4.5e-85 318.5 254 74.0
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 4.5e-85 318.5 254 74.0
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 4.5e-85 318.5 253 75.1
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 1.2e-82 310.5 254 72.8
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 1.2e-82 310.5 252 71.0
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 2.7e-82 309.3 252 73.8
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 2.8e-79 299.3 252 70.6
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 2.8e-79 299.3 252 70.6
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 2.8e-79 299.3 252 70.6
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 1.7e-76 290.0 254 69.7
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 1.7e-76 290.0 254 69.7
BcaC06g31839 Brassica carinata HOM05D004441 ORTHO05D003109 3.2e-75 285.8 238 71.4
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 2.3e-57 226.5 256 59.8
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 5.2e-41 172.2 279 50.2
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 8.9e-41 171.4 285 49.8
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 2.6e-40 169.9 285 49.5
Thhalv10008484m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 8.3e-39 164.9 275 48.7
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 1.9e-35 153.7 285 46.7
Thhalv10024164m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 2.3e-33 146.7 120 72.5
Aa31LG1G3780 Aethionema arabicum HOM05D004441 ORTHO05D003109 3.1e-33 146.4 290 45.2
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.6e-32 143.3 197 52.8
CARHR011330 Cardamine hirsuta HOM05D004441 ORTHO05D003109 3.8e-31 139.4 267 46.8
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 1.2e-29 134.4 204 51.5
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 1.6e-29 134.0 204 51.5
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 5.1e-28 129.0 199 50.8
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 2.9e-23 113.2 196 49.0
BraA09t41810Z Brassica rapa HOM05D004441 ORTHO05D003109 3.8e-23 112.8 275 41.5
C08p48340 Brassica napus HOM05D004441 ORTHO05D003109 3.2e-22 109.8 275 40.0
BolC8t52373H Brassica oleracea HOM05D004441 ORTHO05D003109 3.2e-22 109.8 275 40.0
A09p64850 Brassica napus HOM05D004441 ORTHO05D003109 7.1e-22 108.6 275 41.1
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 1.6e-21 107.5 273 39.6
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 3.5e-21 106.3 284 38.7
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.1e-19 101.3 272 37.1
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 9.6e-19 98.2 271 36.2
BcaC07g41791 Brassica carinata HOM05D004441 ORTHO05D003109 1.3e-18 97.8 280 38.6
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 2.1e-18 97.1 307 36.5
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 2.8e-18 96.7 275 38.9
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 3.6e-18 96.3 269 38.3
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.1e-17 94.7 300 40.0
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.1e-17 94.7 300 40.0
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.1e-17 93.2 300 39.7
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 4.0e-17 92.8 272 35.7
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 2.2e-15 87.0 304 35.2
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 8.4e-15 85.1 263 38.4
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 8.4e-15 85.1 263 38.4
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 1.4e-14 84.3 277 36.5
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.6e-13 80.9 249 38.2
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.1e-13 80.5 293 35.5
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.7e-13 80.1 284 36.3
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.7e-13 80.1 295 36.3
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 3.5e-13 79.7 217 38.2
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 7.9e-13 78.6 277 36.1
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.8e-12 77.4 270 35.6
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 2.3e-12 77.0 249 37.8
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.0e-12 76.6 270 35.9
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 3.0e-12 76.6 257 37.4
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 3.9e-12 76.3 290 35.5
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 6.7e-12 75.5 266 35.0
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 8.7e-12 75.1 260 39.2
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 8.7e-12 75.1 322 32.0
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.9e-11 73.9 296 33.8
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.9e-11 73.9 326 35.0
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 1.9e-11 73.9 265 35.1
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 4.3e-11 72.8 311 35.0
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 9.6e-11 71.6 250 36.0
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.3e-10 71.2 293 34.1
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.3e-10 71.2 252 38.1
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.6e-10 70.9 281 33.5
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.6e-10 70.9 299 32.8
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 1.6e-10 70.9 264 34.8
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 2.1e-10 70.5 246 34.1
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 2.1e-10 70.5 296 33.4
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 3.6e-10 69.7 273 32.2
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.6e-10 69.7 294 31.0
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 4.8e-10 69.3 300 33.0
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.2e-10 68.9 291 33.3
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 8.1e-10 68.6 213 37.1
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 8.1e-10 68.6 275 37.1
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 8.1e-10 68.6 268 35.1
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 8.1e-10 68.6 249 37.3
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.4e-09 67.8 287 32.8
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 1.4e-09 67.8 264 34.5
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.1e-09 66.6 299 32.8
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 3.1e-09 66.6 172 41.3
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 5.3e-09 65.9 197 35.0
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 1.2e-08 64.7 295 34.6
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 2.6e-08 63.5 290 29.0
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 2.6e-08 63.5 297 32.7
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 5.8e-08 62.4 273 32.2
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 5.8e-08 62.4 320 30.6
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 7.6e-08 62.0 259 32.4
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 7.6e-08 62.0 236 33.1
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.3e-07 61.2 275 34.2
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.7e-07 60.8 209 34.0
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 2.9e-07 60.1 276 30.8
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 4.9e-07 59.3 320 30.9
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.1e-06 58.2 251 34.7
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 1.1e-06 58.2 281 32.7
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.4e-06 57.8 262 36.3
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.4e-06 57.8 262 36.3
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.9e-06 57.4 248 33.9
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.4e-06 57.0 268 32.8
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 3.2e-06 56.6 248 33.9
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 4.2e-06 56.2 317 30.3
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 7.1e-06 55.5 263 31.6
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 9.3e-06 55.1 306 31.0


User provided reference genes

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