Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.4e-117 426.4 237 100.0
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.1e-109 400.2 237 92.8
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.9e-109 399.4 237 93.7
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 2.5e-98 362.5 235 86.8
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 5.7e-98 361.3 235 86.8
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 5.7e-98 361.3 235 86.8
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.3e-97 360.1 235 86.4
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.6e-97 359.8 235 86.4
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.4e-96 355.9 236 85.6
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 6.9e-96 354.4 235 84.7
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 2.6e-95 352.4 237 84.4
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 5.9e-95 351.3 235 84.3
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 3.3e-90 335.5 236 82.2
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 9.4e-85 317.4 240 75.8
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 4.8e-81 305.1 238 74.8
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.3e-75 286.2 237 72.2
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.7e-75 284.6 237 72.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 4.4e-74 282.0 239 70.3
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 5.7e-74 281.6 237 70.9
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 9.7e-74 280.8 238 68.5
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 2.4e-72 276.2 239 70.7
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.6e-71 273.5 235 66.8
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 4.5e-71 271.9 235 66.8
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 2.2e-70 269.6 256 65.2
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.8e-70 268.9 248 62.9
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.8e-70 268.9 236 68.6
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 6.5e-70 268.1 235 66.8
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 8.5e-70 267.7 235 68.9
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.9e-69 266.5 238 70.2
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 4.2e-69 265.4 236 70.8
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 7.2e-69 264.6 239 67.4
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.6e-68 263.5 243 67.5
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 2.1e-68 263.1 236 67.8
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 2.7e-68 262.7 235 69.4
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 3.6e-68 262.3 239 62.3
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 6.1e-68 261.5 244 60.2
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.0e-67 260.8 235 68.9
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 2.3e-67 259.6 238 69.7
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 2.3e-67 259.6 238 69.7
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 2.3e-67 259.6 239 60.7
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 3.0e-67 259.2 275 62.9
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 4.0e-67 258.8 235 69.4
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 8.8e-67 257.7 239 60.3
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.2e-66 257.3 232 69.0
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.2e-66 257.3 236 66.5
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.5e-66 256.9 239 67.4
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 2.6e-66 256.1 238 66.4
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 2.6e-66 256.1 235 68.1
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 4.4e-66 255.4 236 66.9
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 7.5e-66 254.6 232 68.5
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 2.2e-65 253.1 232 68.1
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 2.8e-65 252.7 240 65.4
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 6.3e-65 251.5 235 62.1
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.1e-64 250.8 239 64.0
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.4e-64 250.4 185 77.3
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.8e-64 250.0 238 62.6
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.1e-64 249.2 235 61.7
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.6e-63 246.9 240 59.2
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.7e-63 246.1 239 58.2
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 3.5e-63 245.7 180 78.3
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 5.9e-63 245.0 245 60.4
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 7.7e-63 244.6 185 70.8
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.0e-62 244.2 238 62.6
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.7e-62 243.4 244 57.0
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 2.2e-62 243.0 229 65.9
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 2.9e-62 242.7 230 60.0
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 5.0e-62 241.9 236 59.7
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 8.5e-62 241.1 198 71.7
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.1e-61 240.7 237 61.2
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.5e-61 240.4 182 76.4
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 1.9e-61 240.0 185 73.5
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.9e-61 240.0 270 53.3
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.5e-61 239.6 240 57.5
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 3.2e-61 239.2 183 76.0
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 4.2e-61 238.8 226 62.4
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 5.5e-61 238.4 237 62.4
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 5.5e-61 238.4 174 78.2
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 7.2e-61 238.0 184 75.0
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 7.2e-61 238.0 236 58.5
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 7.2e-61 238.0 235 59.1
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 4.7e-60 235.3 184 75.0
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 6.1e-60 235.0 183 73.8
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.0e-59 234.2 188 68.1
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 6.8e-59 231.5 236 61.4
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 8.8e-59 231.1 222 65.3
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 8.8e-59 231.1 191 68.6
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.5e-58 230.3 193 62.7
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 2.0e-58 229.9 240 55.8
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.7e-57 226.9 236 61.0
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.7e-57 226.9 236 61.0
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 2.8e-57 226.1 185 65.9
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 4.8e-57 225.3 252 61.9
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.1e-56 224.2 200 60.0
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 7.0e-56 221.5 185 63.8
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 7.7e-55 218.0 252 51.6
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.3e-54 217.2 202 62.4
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 8.6e-54 214.5 250 52.0
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 2.5e-53 213.0 182 69.8
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 9.5e-53 211.1 141 77.3
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.0e-51 207.6 245 50.2
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.8e-51 206.8 185 62.7
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 5.7e-50 201.8 133 77.4
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 7.5e-50 201.4 237 57.8
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.0e-47 193.4 167 62.9
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.1e-45 187.6 254 46.5
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 5.6e-45 185.3 195 53.3
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 6.8e-43 178.3 190 51.6
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.3e-41 174.1 181 54.7
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.0e-39 166.8 125 78.4
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 3.3e-37 159.5 130 62.3
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.7e-36 155.6 116 71.6
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 1.1e-35 154.5 195 48.2
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 1.8e-35 153.7 260 46.9
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.2e-34 151.0 116 69.0
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 7.5e-34 148.3 176 48.9
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.7e-33 147.1 108 70.4
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.4e-32 144.1 96 74.0
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.6e-28 130.6 152 49.3
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 3.1e-27 126.3 202 42.1
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.6e-26 123.2 73 79.5
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 5.4e-24 115.5 100 56.0
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 9.2e-24 114.8 187 38.5
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 6.0e-23 112.1 152 47.4
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 5.1e-22 109.0 79 63.3
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.1e-21 107.8 222 39.6
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.5e-21 107.5 239 36.4
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.9e-21 107.1 239 36.0
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 2.5e-21 106.7 249 35.7
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 2.5e-21 106.7 240 36.7
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.3e-21 105.9 259 32.4
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 4.7e-20 102.4 97 70.1
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.9e-17 93.2 162 38.9
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.4e-17 91.7 65 73.8
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.6e-15 87.4 94 46.8
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 3.4e-10 69.7 51 70.6
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.3e-09 67.8 117 41.0
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.7e-09 67.4 136 33.8
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.7e-09 67.4 195 32.3
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 2.9e-09 66.6 108 40.7
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.3e-06 57.0 50 60.0


User provided reference genes

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