Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 4.5e-191 671.0 319 100.0
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 5.1e-70 268.9 174 72.4
BcaB01g02146 Brassica carinata HOM05D007210 ORTHO05D006152 5.0e-57 225.7 175 61.1
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.1e-55 220.3 176 61.4
BcaC02g10394 Brassica carinata HOM05D007210 ORTHO05D006152 3.6e-55 219.5 179 58.7
BcaC07g41054 Brassica carinata HOM05D007210 ORTHO05D006152 3.1e-51 206.5 164 61.0
AL2G12250 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.7e-49 200.7 174 57.5
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 3.8e-49 199.5 176 55.7
AT1G63205 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 5.5e-48 195.7 175 57.7
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 8.8e-46 188.3 183 50.8
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 1.5e-45 187.6 168 52.4
AL2G12300 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 9.8e-45 184.9 182 52.7
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 1.3e-44 184.5 167 51.5
Carub.0002s0174 Capsella rubella HOM05D007210 ORTHO05D006152 1.7e-44 184.1 168 51.8
AT1G63200 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.1e-43 179.9 166 50.6
Carub.0002s0170 Capsella rubella HOM05D007210 ORTHO05D006152 4.1e-43 179.5 169 50.3
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 2.3e-41 173.7 168 51.2
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 1.1e-40 171.4 168 50.0
BolC8t51626H Brassica oleracea HOM05D007210 ORTHO05D006152 7.3e-40 168.7 181 49.7
CARHR048290 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.2e-39 167.9 168 46.4
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 1.6e-39 167.5 167 49.7
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 1.6e-39 167.5 167 49.7
BraA08t32080Z Brassica rapa HOM05D007210 ORTHO05D006152 1.4e-38 164.5 168 48.2
Thhalv10023669m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 4.0e-38 162.9 168 51.2
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 6.8e-38 162.2 158 52.5
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.5e-37 161.0 164 53.0
BraA05t19960Z Brassica rapa HOM05D007210 ORTHO05D006152 3.4e-37 159.8 168 46.4
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.3e-36 157.9 164 52.4
A05p10190 Brassica napus HOM05D007210 ORTHO05D006152 1.7e-36 157.5 168 45.8
Sp2g01360 Schrenkiella parvula HOM05D007210 ORTHO05D006152 2.9e-36 156.8 168 48.2
AL2G12270 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.8e-35 154.1 142 50.7
CARHR048280 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.2e-34 151.4 181 46.4
A08p00230 Brassica napus HOM05D007210 ORTHO05D006152 1.0e-33 148.3 199 40.7
Carub.0002s0173 Capsella rubella HOM05D007210 ORTHO05D006152 2.8e-31 140.2 121 57.9
BraA03t10618Z Brassica rapa HOM05D007210 ORTHO05D006152 8.0e-31 138.7 331 31.7
CARHR048270 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.4e-30 137.9 166 42.8
BcaB07g31387 Brassica carinata HOM05D007210 ORTHO05D006152 8.9e-30 135.2 182 39.0
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.8e-29 132.5 167 43.7
AT1G63206 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 5.8e-29 132.5 155 46.5
AL2G12280 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.5e-29 132.1 142 48.6
AT2G37435 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.3e-28 131.3 152 45.4
BcaC05g24442 Brassica carinata HOM05D007210 ORTHO05D006152 2.2e-28 130.6 132 47.7
A09p15630 Brassica napus HOM05D007210 ORTHO05D006152 4.9e-28 129.4 166 41.0
BolC5t29096H Brassica oleracea HOM05D007210 ORTHO05D006152 8.3e-28 128.6 144 45.1
C05p03140 Brassica napus HOM05D007210 ORTHO05D006152 1.4e-27 127.9 144 45.1
Carub.0002s0169 Capsella rubella HOM05D007210 ORTHO05D006152 1.9e-27 127.5 145 43.4
BraA09t37203Z Brassica rapa HOM05D007210 ORTHO05D006152 3.2e-27 126.7 159 41.5
A09p15620 Brassica napus HOM05D007210 ORTHO05D006152 9.2e-27 125.2 182 37.4
Carub.0004s1937 Capsella rubella HOM05D007210 ORTHO05D006152 9.2e-27 125.2 168 38.7
A10p03420 Brassica napus HOM05D007210 ORTHO05D006152 4.6e-26 122.9 141 45.4
CARHR284440 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.0e-25 121.7 145 39.3
Sp2g04770 Schrenkiella parvula HOM05D007210 ORTHO05D006152 1.3e-25 121.3 116 51.7
C04p12630 Brassica napus HOM05D007210 ORTHO05D006152 2.3e-25 120.6 168 38.1
BolC4t22912H Brassica oleracea HOM05D007210 ORTHO05D006152 2.3e-25 120.6 168 38.1
BraA10t42618Z Brassica rapa HOM05D007210 ORTHO05D006152 2.3e-25 120.6 157 43.3
BraA09t37202Z Brassica rapa HOM05D007210 ORTHO05D006152 6.6e-25 119.0 149 39.6
Carub.0004s1936 Capsella rubella HOM05D007210 ORTHO05D006152 8.6e-25 118.6 188 37.8
BcaC04g22476 Brassica carinata HOM05D007210 ORTHO05D006152 1.2e-23 114.8 148 38.5
BolC9t54788H Brassica oleracea HOM05D007210 ORTHO05D006152 1.2e-23 114.8 148 38.5
BcaNung06875 Brassica carinata HOM05D007210 ORTHO05D006152 2.8e-23 113.6 118 48.3
BcaB07g31384 Brassica carinata HOM05D007210 ORTHO05D006152 8.1e-23 112.1 192 33.9
BcaC01g06453 Brassica carinata HOM05D007210 ORTHO05D006152 5.2e-22 109.4 146 39.7
BcaNung05242 Brassica carinata HOM05D007210 ORTHO05D006152 5.2e-22 109.4 146 39.7
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 5.2e-22 109.4 167 35.9
BcaC01g06454 Brassica carinata HOM05D007210 ORTHO05D006152 8.9e-22 108.6 153 38.6
C03p15300 Brassica napus HOM05D007210 ORTHO05D006152 8.9e-22 108.6 153 38.6
C04p29420 Brassica napus HOM05D007210 ORTHO05D006152 8.9e-22 108.6 178 36.0
BolC4t24471H Brassica oleracea HOM05D007210 ORTHO05D006152 8.9e-22 108.6 178 36.0
BraA03t10619Z Brassica rapa HOM05D007210 ORTHO05D006152 3.4e-21 106.7 153 37.9
AL2G12200 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.8e-21 105.9 94 52.1
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 5.8e-21 105.9 154 37.0
BcaNung05243 Brassica carinata HOM05D007210 ORTHO05D006152 5.8e-21 105.9 153 38.6
BolC3t13971H Brassica oleracea HOM05D007210 ORTHO05D006152 7.5e-21 105.5 141 39.0
AL5G33880 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 9.8e-21 105.1 126 38.1
A03p13080 Brassica napus HOM05D007210 ORTHO05D006152 9.8e-21 105.1 153 37.3
A03p13090 Brassica napus HOM05D007210 ORTHO05D006152 1.7e-20 104.4 146 39.7
BolC3t13970H Brassica oleracea HOM05D007210 ORTHO05D006152 1.7e-20 104.4 153 35.9
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 2.2e-20 104.0 138 39.1
BcaC02g11660 Brassica carinata HOM05D007210 ORTHO05D006152 2.9e-20 103.6 164 37.2
Thhalv10023805m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 4.9e-20 102.8 132 42.4
BcaB01g04428 Brassica carinata HOM05D007210 ORTHO05D006152 3.2e-19 100.1 134 38.8
Carub.0002s0164 Capsella rubella HOM05D007210 ORTHO05D006152 4.1e-19 99.8 85 54.1
Sp6g37770 Schrenkiella parvula HOM05D008885 ORTHO05D006152 9.2e-19 98.6 122 44.3
BcaC03g13143 Brassica carinata HOM05D008885 ORTHO05D006152 4.6e-18 96.3 141 37.6
C02p02150 Brassica napus HOM05D008885 ORTHO05D006152 4.6e-18 96.3 141 37.6
BolC2t06184H Brassica oleracea HOM05D008885 ORTHO05D006152 4.6e-18 96.3 141 37.6
Sp2g01340 Schrenkiella parvula HOM05D007210 ORTHO05D006152 4.6e-18 96.3 62 72.6
BraA02t04833Z Brassica rapa HOM05D008885 ORTHO05D006152 7.8e-18 95.5 141 37.6
A07p12710 Brassica napus HOM05D008885 ORTHO05D006152 1.7e-17 94.4 134 41.8
BcaC03g13144 Brassica carinata HOM05D008885 ORTHO05D006152 2.3e-17 94.0 141 38.3
C02p02160 Brassica napus HOM05D008885 ORTHO05D006152 2.3e-17 94.0 141 38.3
BcaB05g21736 Brassica carinata HOM05D008885 ORTHO05D006152 5.1e-17 92.8 126 35.7
BraA07t29049Z Brassica rapa HOM05D008885 ORTHO05D006152 5.1e-17 92.8 126 42.1
A10p14200 Brassica napus HOM05D007210 ORTHO05D006152 6.6e-17 92.4 166 34.3
BraA10t43513Z Brassica rapa HOM05D007210 ORTHO05D006152 6.6e-17 92.4 166 34.3
BcaB05g21732 Brassica carinata HOM05D008885 ORTHO05D006152 1.1e-16 91.7 141 36.9
BcaB05g21733 Brassica carinata HOM05D008885 ORTHO05D006152 1.1e-16 91.7 141 36.9
BolC2t06185H Brassica oleracea HOM05D008885 ORTHO05D006152 1.1e-16 91.7 141 36.9
Thhalv10015529m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 1.1e-16 91.7 140 41.4
BraA10t43511Z Brassica rapa HOM05D007210 ORTHO05D006152 1.5e-16 91.3 142 37.3
AT5G05040 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 3.3e-16 90.1 130 42.3
BraA02t04831Z Brassica rapa HOM05D008885 ORTHO05D006152 3.3e-16 90.1 127 37.0
Carub.0006s0398 Capsella rubella HOM05D008885 ORTHO05D006152 3.3e-16 90.1 127 35.4
AL6G14830 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 4.3e-16 89.7 112 39.3
BcaC03g13142 Brassica carinata HOM05D008885 ORTHO05D006152 4.3e-16 89.7 127 37.0
A10p14180 Brassica napus HOM05D007210 ORTHO05D006152 4.3e-16 89.7 167 35.3
C09p48590 Brassica napus HOM05D007210 ORTHO05D006152 4.3e-16 89.7 166 33.7
BolC2t06182H Brassica oleracea HOM05D008885 ORTHO05D006152 4.3e-16 89.7 127 37.0
BraA02t04832Z Brassica rapa HOM05D008885 ORTHO05D006152 4.3e-16 89.7 142 35.2
BcaB05g21588 Brassica carinata HOM05D008885 ORTHO05D006152 7.3e-16 89.0 141 36.2
AT5G05060 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 1.2e-15 88.2 130 41.5
BcaB07g31391 Brassica carinata HOM05D007210 ORTHO05D006152 2.1e-15 87.4 139 34.5
C05p13910 Brassica napus HOM05D007210 ORTHO05D006152 4.7e-15 86.3 149 32.2
Thhalv10015607m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 6.2e-15 85.9 118 39.0
Carub.0006s0396 Capsella rubella HOM05D008885 ORTHO05D006152 1.1e-14 85.1 156 36.5
AL8G32780 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.0e-14 83.2 150 32.0
BolC5t30124H Brassica oleracea HOM05D007210 ORTHO05D006152 5.2e-14 82.8 149 31.5
BraA10t43512Z Brassica rapa HOM05D007210 ORTHO05D006152 1.5e-13 81.3 136 33.8
BcaB05g21589 Brassica carinata HOM05D008885 ORTHO05D006152 2.6e-13 80.5 163 31.9
Thhalv10024042m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 2.6e-13 80.5 181 33.1
BcaB05g21731 Brassica carinata HOM05D008885 ORTHO05D006152 3.4e-13 80.1 125 34.4
BcaB08g36043 Brassica carinata HOM05D007210 ORTHO05D006152 4.4e-13 79.7 177 31.6
A10p14190 Brassica napus HOM05D007210 ORTHO05D006152 5.8e-13 79.3 143 32.2
BolC3t13972H Brassica oleracea HOM05D007210 ORTHO05D006152 5.8e-13 79.3 103 37.9
THA.LOC104809659 Tarenaya hassleriana HOM05D007210 ORTHO05D006152 1.3e-12 78.2 117 37.6
Carub.0008s1740 Capsella rubella HOM05D007210 ORTHO05D006152 1.7e-12 77.8 174 31.6
BcaB08g36040 Brassica carinata HOM05D007210 ORTHO05D006152 2.2e-12 77.4 131 34.4
AL1G58370 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 3.7e-12 76.6 110 34.5
CARHR208050 Cardamine hirsuta HOM05D008885 ORTHO05D006152 3.7e-12 76.6 114 40.4
BcaC04g20042 Brassica carinata HOM05D007210 ORTHO05D019922 1.9e-11 74.3 120 35.8
BolC9t57696H Brassica oleracea HOM05D007210 ORTHO05D006152 1.9e-11 74.3 120 35.8
C03p15310 Brassica napus HOM05D007210 ORTHO05D006152 1.2e-10 71.6 153 30.7
CARHR040780 Cardamine hirsuta HOM05D008885 ORTHO05D006152 3.5e-10 70.1 130 32.3
CARHR208210 Cardamine hirsuta HOM05D008885 ORTHO05D006152 1.3e-09 68.2 130 33.8
AL7G39710 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 1.7e-09 67.8 130 33.8
Dinv04048 Davidia involucrata HOM05D000041 ORTHO05D019419 1.7e-09 67.8 116 37.9
Dinv41634 Davidia involucrata HOM05D008623 ORTHO05D007789 5.1e-09 66.2 124 32.3
Carub.0007s2602 Capsella rubella HOM05D008242 ORTHO05D012602 1.5e-08 64.7 130 30.8
AT1G50690 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 1.9e-08 64.3 113 34.5
Rhsim04G0228800 Rhododendron simsii HOM05D009663 ORTHO05D011812 1.9e-08 64.3 162 27.8
Dinv01175 Davidia involucrata HOM05D008623 ORTHO05D007789 4.3e-08 63.2 124 31.5
AL7G39700 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 7.3e-08 62.4 126 32.5
PGSC0003DMG400006632 Solanum tuberosum HOM05D010354 ORTHO05D012840 9.6e-08 62.0 141 30.5
Hma1.2p1_0785F.1_g217500 Hydrangea macrophylla HOM05D008623 ORTHO05D007789 1.2e-07 61.6 125 32.0
Rhsim04G0228600 Rhododendron simsii HOM05D009663 ORTHO05D011812 1.6e-07 61.2 132 30.3
Dinv41577 Davidia involucrata HOM05D008623 ORTHO05D007789 2.8e-07 60.5 115 36.5
RhsimUnG0148900 Rhododendron simsii HOM05D009663 ORTHO05D011812 2.8e-07 60.5 82 35.4
Carub.0007s2681 Capsella rubella HOM05D008242 ORTHO05D012602 3.6e-07 60.1 130 31.5
CARHR040800 Cardamine hirsuta HOM05D008885 ORTHO05D006152 3.6e-07 60.1 79 36.7
Lj1A786G23 Lonicera japonica HOM05D011954 ORTHO05D014236 1.8e-06 57.8 159 28.3
Rhsim12G0199400 Rhododendron simsii HOM05D009663 ORTHO05D007789 2.4e-06 57.4 130 27.7
Rhsim13G0014700 Rhododendron simsii HOM05D009663 ORTHO05D007789 2.4e-06 57.4 139 32.4
Rhsim06G0172100 Rhododendron simsii HOM05D000032 ORTHO05D009914 5.2e-06 56.2 150 31.3


User provided reference genes

Program Settings