Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 2.2e-30 135.2 78 100.0
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.7e-22 107.8 79 67.1
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.1e-21 106.3 78 79.5
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.4e-21 105.9 78 80.8
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.2e-20 102.8 77 66.2
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.7e-20 101.7 78 66.7
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.7e-20 101.7 78 74.4
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 3.5e-20 101.3 78 75.6
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 4.5e-20 100.9 77 64.9
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 7.7e-20 100.1 79 64.6
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.7e-19 99.0 78 75.6
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 2.3e-19 98.6 78 65.4
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 2.3e-19 98.6 70 70.0
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 2.3e-19 98.6 70 70.0
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 2.3e-19 98.6 78 64.1
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 2.3e-19 98.6 78 64.1
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.3e-19 98.6 78 64.1
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-19 98.2 78 62.8
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-19 98.2 70 70.0
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.9e-19 98.2 70 70.0
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.9e-19 98.2 70 70.0
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.9e-19 98.2 70 70.0
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 2.9e-19 98.2 78 71.8
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.9e-19 98.2 70 70.0
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 3.8e-19 97.8 78 70.5
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 3.8e-19 97.8 78 70.5
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 3.8e-19 97.8 78 70.5
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 3.8e-19 97.8 78 70.5
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 3.8e-19 97.8 78 70.5
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 8.6e-19 96.7 70 67.1
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 8.6e-19 96.7 78 62.8
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 8.6e-19 96.7 78 75.6
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.1e-18 96.3 70 68.6
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.1e-18 96.3 70 68.6
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.1e-18 96.3 50 88.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.1e-18 96.3 78 62.8
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.5e-18 95.9 81 61.7
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.5e-18 95.9 79 63.3
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.9e-18 95.5 78 61.5
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.5e-18 95.1 84 72.6
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 2.5e-18 95.1 78 71.8
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 3.3e-18 94.7 79 63.3
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 4.2e-18 94.4 50 84.0
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 4.2e-18 94.4 70 67.1
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 4.2e-18 94.4 78 60.3
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 4.2e-18 94.4 79 62.0
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 5.5e-18 94.0 78 73.1
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 5.5e-18 94.0 80 61.2
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 7.2e-18 93.6 79 62.0
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 9.5e-18 93.2 77 70.1
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 9.5e-18 93.2 79 62.0
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 9.5e-18 93.2 79 62.0
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 9.5e-18 93.2 79 62.0
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.2e-17 92.8 78 60.3
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 1.2e-17 92.8 78 67.9
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.2e-17 92.8 77 67.5
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.2e-17 92.8 80 60.0
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.6e-17 92.4 79 58.2
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 2.1e-17 92.0 79 60.8
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 2.8e-17 91.7 79 60.8
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.8e-17 91.7 79 58.2
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 2.8e-17 91.7 79 58.2
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 2.8e-17 91.7 79 60.8
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 3.6e-17 91.3 79 58.2
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 3.6e-17 91.3 78 57.7
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 3.6e-17 91.3 78 57.7
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 3.6e-17 91.3 77 58.4
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 4.7e-17 90.9 76 59.2
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 6.1e-17 90.5 78 56.4
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 6.1e-17 90.5 79 59.5
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 6.1e-17 90.5 82 58.5
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 6.1e-17 90.5 82 58.5
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 6.1e-17 90.5 81 59.3
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 6.1e-17 90.5 78 59.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 8.0e-17 90.1 82 58.5
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 8.0e-17 90.1 79 59.5
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 8.0e-17 90.1 79 60.8
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 8.0e-17 90.1 79 60.8
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 1.0e-16 89.7 79 58.2
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 1.0e-16 89.7 78 65.4
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.0e-16 89.7 79 58.2
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.0e-16 89.7 50 80.0
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.8e-16 89.0 77 58.4
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 2.3e-16 88.6 82 57.3
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.3e-16 88.6 78 57.7
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 2.3e-16 88.6 79 60.8
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.0e-16 88.2 76 56.6
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 4.0e-16 87.8 79 55.7
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 5.2e-16 87.4 80 52.5
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 6.8e-16 87.0 80 57.5
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 6.8e-16 87.0 79 57.0
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 6.8e-16 87.0 78 53.8
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 8.9e-16 86.7 77 57.1
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 8.9e-16 86.7 79 55.7
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 8.9e-16 86.7 80 61.2
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.9e-16 86.7 80 57.5
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 8.9e-16 86.7 81 58.0
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 8.9e-16 86.7 78 55.1
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 1.2e-15 86.3 78 57.7
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.2e-15 86.3 81 56.8
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 1.2e-15 86.3 80 56.2
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 1.2e-15 86.3 80 56.2
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.5e-15 85.9 48 77.1
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.0e-15 85.5 76 53.9
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.6e-15 85.1 80 55.0
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.6e-15 85.1 80 55.0
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 4.4e-15 84.3 71 57.7
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 4.4e-15 84.3 78 53.8
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 4.4e-15 84.3 80 51.2
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 5.7e-15 84.0 81 66.7
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 7.5e-15 83.6 75 53.3
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 7.5e-15 83.6 80 53.8
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 9.8e-15 83.2 80 53.8
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 9.8e-15 83.2 80 62.5
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.3e-14 82.8 45 77.8
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.7e-14 82.4 46 73.9
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.2e-14 82.0 76 51.3
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 3.7e-14 81.3 65 55.4
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 3.7e-14 81.3 43 81.4
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.7e-14 81.3 74 59.5
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.9e-14 80.9 81 49.4
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 4.9e-14 80.9 79 53.2
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 4.9e-14 80.9 46 71.7
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 4.9e-14 80.9 79 54.4
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 8.3e-14 80.1 68 61.8
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 8.3e-14 80.1 76 51.3
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 8.3e-14 80.1 46 73.9
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.1e-13 79.7 42 81.0
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.1e-13 79.7 45 73.3
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.1e-13 79.7 45 73.3
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.4e-13 78.6 46 71.7
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 5.4e-13 77.4 76 55.3
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 7.0e-13 77.0 43 74.4
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.0e-13 77.0 45 73.3
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.6e-12 75.9 77 51.9
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 2.0e-12 75.5 79 51.9
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.7e-12 75.1 43 67.4
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.7e-11 72.4 45 62.2
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.7e-11 72.4 45 64.4
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 3.9e-11 71.2 43 62.8
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 5.0e-11 70.9 66 56.1
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.1e-10 69.7 45 68.9
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 1.5e-10 69.3 68 51.5
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 2.5e-10 68.6 44 61.4
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 3.3e-10 68.2 71 52.1
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 2.8e-09 65.1 42 57.1
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 3.6e-09 64.7 62 56.5
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 8.0e-09 63.5 35 80.0
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 2.0e-07 58.9 61 49.2
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 7.5e-07 57.0 60 50.0
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 9.8e-07 56.6 57 54.4


User provided reference genes

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