Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 2.0e-176 622.5 355 100.0
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 5.8e-139 498.0 357 81.0
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 3.8e-138 495.4 360 81.1
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 9.9e-123 444.1 359 74.7
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 2.0e-115 419.9 360 70.8
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 7.6e-115 417.9 359 68.5
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 1.8e-95 353.6 356 66.0
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 2.3e-95 353.2 357 66.1
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 1.5e-91 340.5 354 65.3
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 9.4e-89 331.3 353 62.6
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 1.2e-88 330.9 353 62.6
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 1.2e-88 330.9 353 62.6
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 1.3e-74 284.3 357 54.6
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 5.2e-71 272.3 377 51.5
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 6.0e-51 205.7 249 49.0
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 4.7e-48 196.1 266 49.2
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 2.3e-47 193.7 388 40.5
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 5.8e-46 189.1 259 43.6
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 9.8e-46 188.3 244 47.5
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 1.7e-45 187.6 253 49.0
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.7e-45 187.6 243 49.4
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 9.2e-44 181.8 236 50.0
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 1.6e-43 181.0 303 39.9
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 2.1e-43 180.6 246 47.6
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 2.1e-43 180.6 290 42.4
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 4.6e-43 179.5 274 45.3
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 6.0e-43 179.1 382 36.6
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 6.0e-43 179.1 279 44.1
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 7.8e-43 178.7 380 36.1
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 7.8e-43 178.7 310 40.3
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 1.3e-42 177.9 309 39.8
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 1.3e-42 177.9 294 42.5
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 6.6e-42 175.6 390 35.6
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 1.5e-41 174.5 279 44.4
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 3.3e-41 173.3 263 43.7
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 6.2e-40 169.1 298 44.0
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 8.1e-40 168.7 351 39.0
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 1.1e-39 168.3 294 40.1
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 1.4e-39 167.9 269 41.3
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 1.4e-39 167.9 295 41.4
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 1.4e-39 167.9 294 40.8
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.4e-39 167.9 351 39.0
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 6.8e-39 165.6 351 38.7
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 6.8e-39 165.6 351 38.7
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 3.4e-38 163.3 371 36.1
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 5.8e-38 162.5 303 38.0
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 7.6e-38 162.2 307 43.3
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 2.2e-37 160.6 385 35.6
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 2.2e-37 160.6 294 38.1
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 6.4e-37 159.1 291 39.9
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 1.1e-36 158.3 381 34.9
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 1.9e-36 157.5 253 43.9
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 5.4e-36 156.0 274 42.3
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 7.1e-36 155.6 282 42.6
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.6e-35 154.5 242 40.1
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 4.6e-35 152.9 242 40.1
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 1.3e-34 151.4 336 36.3
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 8.6e-34 148.7 242 39.7
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.1e-33 148.3 242 38.0
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 1.9e-33 147.5 256 41.0
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 2.1e-32 144.1 263 37.6
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 2.1e-32 144.1 243 40.3
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 2.8e-32 143.7 289 40.8
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 4.7e-32 142.9 235 39.1
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.8e-31 141.0 258 39.1
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 3.1e-31 140.2 295 38.0
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 5.2e-31 139.4 268 38.4
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 8.9e-31 138.7 283 38.9
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 8.9e-31 138.7 252 40.9
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 8.9e-31 138.7 268 38.1
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 2.6e-30 137.1 305 37.0
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 3.8e-29 133.3 282 37.2
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 3.8e-29 133.3 297 36.7
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 7.1e-28 129.0 234 36.8
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 2.1e-27 127.5 296 39.2
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 4.6e-27 126.3 370 33.0
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 2.3e-26 124.0 295 35.3
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 6.6e-26 122.5 266 34.6
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 1.9e-25 120.9 372 30.9
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 3.3e-25 120.2 391 29.4
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 2.8e-24 117.1 215 39.5
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 6.2e-24 115.9 226 39.4
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 9.0e-23 112.1 247 35.2
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 2.7e-19 100.5 299 35.1
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 3.9e-18 96.7 172 39.0
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 6.6e-18 95.9 306 30.4
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 2.8e-16 90.5 216 35.2
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 2.6e-14 84.0 195 33.3
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 6.0e-11 72.8 172 39.0
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.3e-08 65.1 236 28.4
COL.COLO4_10689 Corchorus olitorius HOM05D007666 ORTHO05D009567 1.3e-08 65.1 107 39.3
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 3.7e-08 63.5 242 31.0
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.1e-07 62.0 274 30.3
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 6.9e-07 59.3 253 28.9
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.0e-05 55.5 275 27.3


User provided reference genes

Program Settings