Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 0.0e+00 1081.6 533 100.0
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 2.6e-292 1008.1 532 92.9
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 7.8e-289 996.5 529 91.9
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 3.2e-282 974.5 534 88.4
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 5.8e-276 953.7 530 87.4
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 5.1e-272 940.6 531 86.4
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 1.2e-265 919.5 532 84.8
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 2.1e-265 918.7 527 85.0
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 2.3e-264 915.2 530 84.9
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 3.9e-264 914.4 527 84.8
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 1.5e-263 912.5 527 84.6
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 1.5e-263 912.5 530 84.5
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 2.1e-257 892.1 529 81.1
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 2.6e-183 646.0 540 58.0
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 7.5e-183 644.4 533 57.6
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 1.9e-181 639.8 539 58.6
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 9.2e-181 637.5 540 57.2
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 6.0e-180 634.8 537 58.5
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.5e-178 630.2 541 56.0
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 7.3e-178 627.9 540 57.8
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 1.6e-177 626.7 541 57.3
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 2.1e-177 626.3 533 57.6
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 2.1e-177 626.3 529 56.9
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 2.1e-177 626.3 545 55.8
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 6.2e-177 624.8 540 56.9
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 1.1e-176 624.0 543 56.4
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 3.1e-176 622.5 534 57.3
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 1.2e-175 620.5 541 55.6
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 1.5e-175 620.2 539 56.0
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 9.9e-175 617.5 540 55.9
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 3.7e-174 615.5 536 56.3
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 4.9e-174 615.1 534 56.7
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 3.2e-173 612.5 531 55.7
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 4.1e-173 612.1 525 56.6
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 1.2e-172 610.5 546 55.5
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 2.7e-172 609.4 527 56.9
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 1.9e-170 603.2 528 58.1
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 9.5e-170 600.9 533 54.6
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 1.2e-169 600.5 536 55.6
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 8.1e-169 597.8 532 56.4
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 4.0e-168 595.5 531 54.0
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 4.4e-167 592.0 575 52.2
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 9.2e-165 584.3 524 56.3
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 1.2e-164 583.9 532 55.5
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 3.5e-164 582.4 526 53.6
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.5e-164 582.4 524 56.1
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 6.0e-164 581.6 539 53.6
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 6.6e-163 578.2 530 52.6
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 8.7e-163 577.8 526 53.8
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 1.9e-162 576.6 536 52.8
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 1.9e-162 576.6 537 53.3
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 3.3e-162 575.9 540 52.2
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 7.3e-162 574.7 530 52.6
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 2.1e-161 573.2 558 51.1
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 3.1e-160 569.3 524 51.7
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 6.9e-160 568.2 536 54.1
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 9.0e-160 567.8 496 55.4
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.5e-159 567.0 535 52.1
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 3.4e-159 565.8 535 53.1
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 9.9e-159 564.3 535 52.7
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 8.4e-158 561.2 533 51.8
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 1.1e-157 560.8 532 52.3
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.4e-157 560.5 524 54.8
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 3.2e-157 559.3 536 52.2
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 2.1e-156 556.6 637 47.4
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 2.1e-156 556.6 532 51.5
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 2.1e-156 556.6 501 54.9
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 1.7e-155 553.5 528 51.9
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 5.6e-154 548.5 525 51.4
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 5.8e-151 538.5 527 53.7
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 2.9e-150 536.2 537 51.0
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 1.9e-149 533.5 509 53.6
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 2.4e-149 533.1 528 51.3
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 1.0e-147 527.7 533 50.7
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.8e-147 526.9 350 74.0
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 4.3e-146 522.3 527 51.2
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 9.6e-146 521.2 480 52.9
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 2.8e-145 519.6 755 38.9
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 8.1e-145 518.1 529 49.5
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 2.4e-144 516.5 514 49.8
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 5.8e-143 511.9 468 53.0
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 2.1e-140 503.4 475 54.3
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 8.7e-139 498.0 491 51.9
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 1.3e-134 484.2 501 56.1
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 3.3e-130 469.5 530 46.4
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 5.7e-130 468.8 526 47.3
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 1.3e-129 467.6 528 46.4
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 1.4e-128 464.2 364 59.3
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 4.1e-128 462.6 536 45.1
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 2.4e-120 436.8 438 50.2
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 2.3e-115 420.2 521 42.6
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 4.5e-111 406.0 528 42.2
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 7.7e-111 405.2 528 42.2
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 5.5e-109 399.1 537 41.0
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 4.4e-106 389.4 468 46.2
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 1.5e-101 374.4 295 59.3
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 9.8e-90 335.1 258 59.3
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.4e-88 331.3 256 59.0
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.1e-85 321.6 185 80.5
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 1.3e-81 308.1 530 34.3
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 2.3e-78 297.4 265 57.0
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 1.1e-77 295.0 275 54.2
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.4e-72 278.1 318 48.7
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 3.2e-72 276.9 281 50.5
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 6.0e-71 272.7 207 58.9
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 2.2e-65 254.2 257 52.5
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 4.3e-61 240.0 439 35.8
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 2.3e-59 234.2 264 46.2
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.1e-53 215.3 285 44.2
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.1e-47 194.5 188 53.7
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 1.6e-44 184.9 428 32.9
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 2.1e-36 157.9 181 51.4
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 2.1e-36 157.9 181 51.4
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 1.5e-34 151.8 123 60.2
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.4e-32 145.2 302 31.8
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 7.1e-32 142.9 101 71.3
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 6.0e-31 139.8 120 55.0
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 3.4e-26 124.0 489 25.6
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 4.3e-21 107.1 113 51.3
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 1.0e-14 85.9 122 40.2
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 1.1e-11 75.9 341 23.2
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 2.4e-11 74.7 336 24.4
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 2.0e-10 71.6 343 23.0
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 7.7e-10 69.7 339 22.4
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 5.0e-09 67.0 80 45.0
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 8.5e-09 66.2 38 73.7
BcaB07g33306 Brassica carinata HOM05D000305 ORTHO05D000065 1.9e-08 65.1 33 84.8
Ciclev10001481m.g Citrus clementina HOM05D008167 ORTHO05D010296 2.5e-08 64.7 263 22.8
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 5.5e-08 63.5 80 38.8
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 9.4e-08 62.8 353 23.8
GSVIVG01009002001 Vitis vinifera HOM05D008167 ORTHO05D010296 3.6e-07 60.8 284 23.9
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 1.0e-06 59.3 343 21.9
Nn1g05299 Nelumbo nucifera HOM05D008167 ORTHO05D010296 2.3e-06 58.2 344 20.1
PSO133G0102 Papaver somniferum HOM05D008167 ORTHO05D010296 3.0e-06 57.8 264 22.0
Potri.002G093800 Populus trichocarpa HOM05D008167 ORTHO05D010296 3.0e-06 57.8 329 21.0
VMungo0331G0414 Vigna mungo HOM05D008167 ORTHO05D010296 3.0e-06 57.8 331 23.6
Dinv13035 Davidia involucrata HOM05D008167 ORTHO05D010296 8.8e-06 56.2 276 21.7
Thecc.08G110600 Theobroma cacao HOM05D008167 ORTHO05D010296 8.8e-06 56.2 290 21.7


User provided reference genes

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