Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 7.1e-108 394.0 212 100.0
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 3.5e-99 365.2 212 93.9
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 9.6e-97 357.1 212 92.5
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 5.4e-92 341.3 209 90.4
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 3.0e-90 335.5 211 87.7
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 1.6e-88 329.7 209 89.0
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 1.9e-84 316.2 212 85.4
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 5.4e-84 314.7 211 84.4
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 1.6e-83 313.2 211 83.4
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 1.6e-83 313.2 211 83.4
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 1.6e-83 313.2 211 83.4
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 1.6e-83 313.2 211 83.9
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 2.1e-72 276.2 196 81.6
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 1.8e-66 256.5 157 87.9
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.9e-66 255.4 183 78.7
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 1.5e-65 253.4 183 78.7
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.3e-65 252.3 181 77.3
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 5.7e-65 251.5 189 74.6
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 9.6e-65 250.8 189 74.6
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 6.2e-64 248.1 203 72.9
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 1.1e-63 247.3 180 77.8
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 3.1e-63 245.7 214 70.6
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 4.1e-63 245.4 216 68.5
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 6.9e-63 244.6 182 76.9
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 1.2e-62 243.8 182 77.5
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 1.2e-62 243.8 182 77.5
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.2e-62 243.8 216 68.5
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 1.2e-62 243.8 216 68.5
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 2.0e-62 243.0 184 72.8
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 5.8e-62 241.5 184 72.8
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 1.7e-61 240.0 184 75.5
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 3.8e-61 238.8 184 72.3
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 5.0e-61 238.4 170 75.3
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 5.0e-61 238.4 201 69.2
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 8.4e-61 237.7 184 71.7
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 8.4e-61 237.7 184 71.7
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 8.4e-61 237.7 184 71.7
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 8.4e-61 237.7 159 80.5
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 1.1e-60 237.3 183 73.2
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 3.2e-60 235.7 184 72.3
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 4.2e-60 235.3 150 83.3
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 1.2e-59 233.8 180 73.3
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 2.7e-59 232.6 180 75.0
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 2.7e-59 232.6 180 75.0
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 3.5e-59 232.3 183 72.7
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 3.5e-59 232.3 187 71.1
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 3.5e-59 232.3 161 77.6
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 3.5e-59 232.3 181 71.8
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 4.6e-59 231.9 213 64.8
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 4.6e-59 231.9 179 72.6
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 6.1e-59 231.5 182 72.0
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 7.9e-59 231.1 176 75.0
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 1.3e-58 230.3 186 72.0
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 1.3e-58 230.3 179 72.6
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 1.3e-58 230.3 179 73.2
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 1.3e-58 230.3 178 71.9
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 1.3e-58 230.3 176 72.7
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 1.8e-58 229.9 185 71.4
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 2.3e-58 229.6 179 70.9
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 3.0e-58 229.2 161 77.0
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 6.7e-58 228.0 213 65.3
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 3.3e-57 225.7 206 65.0
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 4.3e-57 225.3 150 80.7
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 5.7e-57 224.9 165 75.2
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 5.7e-57 224.9 160 76.9
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 9.7e-57 224.2 160 75.6
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 1.6e-56 223.4 181 71.3
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 3.7e-56 222.2 205 63.9
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 4.8e-56 221.9 176 71.6
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 4.8e-56 221.9 184 70.1
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 6.3e-56 221.5 182 69.8
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 8.2e-56 221.1 159 75.5
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 1.8e-55 219.9 182 70.9
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 4.1e-55 218.8 182 70.3
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 4.1e-55 218.8 204 63.7
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 2.0e-54 216.5 198 64.6
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 2.6e-54 216.1 224 60.7
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 3.4e-54 215.7 182 71.4
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 4.5e-54 215.3 192 66.1
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 4.5e-54 215.3 166 71.1
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 7.7e-54 214.5 224 61.6
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 4.6e-51 205.3 166 71.7
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 6.1e-51 204.9 161 72.7
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 3.0e-50 202.6 204 60.8
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 1.3e-48 197.2 152 69.7
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 2.8e-48 196.1 208 63.0
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 1.8e-47 193.4 129 78.3
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 4.1e-47 192.2 194 59.3
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 2.0e-46 189.9 137 78.1
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 2.9e-45 186.0 159 62.3
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 1.4e-44 183.7 145 69.0
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 4.8e-40 168.7 118 76.3
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 1.2e-38 164.1 164 61.0
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 1.0e-37 161.0 162 58.6
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 1.1e-36 157.5 204 52.5
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 1.5e-36 157.1 107 79.4
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 2.5e-36 156.4 106 79.2
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 4.2e-36 155.6 130 70.8
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 1.0e-26 124.4 82 82.9
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 6.8e-26 121.7 82 81.7
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 1.6e-22 110.5 135 45.9
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 2.9e-21 106.3 88 64.8
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 6.5e-21 105.1 74 78.4
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 8.0e-19 98.2 102 58.8
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 3.0e-18 96.3 58 87.9
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 2.3e-13 80.1 112 40.2
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 4.0e-10 69.3 107 43.0
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 6.8e-10 68.6 48 75.0
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.2e-09 67.8 46 78.3
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 1.3e-08 64.3 103 35.0
FAN06G0875 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.7e-06 56.6 37 75.7


User provided reference genes

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