Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 0.0e+00 1382.9 861 100.0
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 1.9e-308 1062.4 848 82.8
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 7.4e-297 1023.8 847 81.7
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 3.0e-290 1001.9 860 77.7
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 2.0e-281 972.6 860 74.2
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 2.1e-267 926.0 853 77.0
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 1.3e-261 906.7 851 75.2
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 1.5e-257 893.3 850 74.6
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.3e-248 863.6 851 73.1
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 1.6e-246 856.7 851 72.9
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 2.8e-240 835.9 854 71.3
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.2e-185 654.4 880 60.2
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 2.1e-158 563.9 834 51.2
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 1.5e-124 451.4 899 43.7
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 8.3e-123 445.7 785 46.0
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 5.9e-121 439.5 795 44.8
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 7.8e-121 439.1 982 40.9
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 1.2e-116 425.2 794 44.0
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 3.5e-113 413.7 775 43.7
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 8.6e-112 409.1 831 43.4
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 3.6e-110 403.7 838 40.6
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 1.7e-107 394.8 967 36.6
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.4e-106 391.7 817 44.8
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 9.2e-106 389.0 797 39.0
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 7.8e-105 386.0 791 38.2
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.3e-104 385.2 855 40.4
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 2.3e-104 384.4 957 38.0
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 2.5e-103 380.9 611 44.2
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 9.5e-103 379.0 824 42.4
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.8e-102 377.5 667 40.2
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 3.6e-102 377.1 774 41.2
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 3.6e-102 377.1 678 42.2
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.1e-101 375.6 831 42.1
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.1e-101 375.6 819 41.6
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 1.8e-101 374.8 901 37.8
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 2.3e-101 374.4 763 42.3
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 5.2e-101 373.2 722 39.5
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.6e-100 370.9 837 39.5
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.4e-100 370.5 770 40.6
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 4.4e-100 370.2 857 40.5
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 1.1e-98 365.5 733 41.9
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 2.4e-98 364.4 771 41.1
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 3.2e-98 364.0 857 40.3
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 7.1e-98 362.8 769 40.7
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.7e-96 358.2 836 40.4
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 2.3e-96 357.8 705 39.4
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 2.3e-96 357.8 751 37.4
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 3.0e-96 357.5 721 40.4
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 5.1e-96 356.7 518 47.1
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 3.3e-95 354.0 734 41.1
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 3.3e-95 354.0 784 39.5
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 5.6e-95 353.2 744 37.8
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 1.2e-94 352.1 589 43.3
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 2.1e-94 351.3 761 39.2
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 8.1e-94 349.4 875 35.0
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 6.8e-93 346.3 797 38.6
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 4.4e-92 343.6 998 35.0
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.7e-91 341.7 787 38.2
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 3.8e-91 340.5 878 39.6
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 3.8e-91 340.5 564 42.4
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 1.1e-90 339.0 559 43.5
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 1.6e-89 335.1 918 35.2
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 4.6e-89 333.6 411 51.3
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 7.8e-89 332.8 787 35.5
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 1.0e-88 332.4 443 49.2
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.7e-88 331.6 737 42.9
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 1.7e-88 331.6 766 40.3
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 3.9e-88 330.5 573 40.5
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 8.7e-88 329.3 465 45.6
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 1.9e-87 328.2 652 38.8
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.9e-87 328.2 820 41.0
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 3.3e-87 327.4 372 53.0
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 6.9e-85 319.7 892 33.6
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 6.9e-85 319.7 441 47.6
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 6.9e-85 319.7 874 39.9
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 9.0e-85 319.3 448 48.9
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.5e-84 318.5 447 48.1
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 4.4e-84 317.0 814 37.7
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 3.8e-83 313.9 773 37.8
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 6.0e-81 306.6 599 40.1
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.6e-78 298.5 763 34.9
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 4.0e-77 293.9 440 45.2
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 1.2e-76 292.4 627 41.1
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 8.4e-75 286.2 850 32.1
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 9.3e-74 282.7 475 41.3
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 3.9e-72 277.3 395 45.8
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.9e-71 275.0 363 47.7
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 3.3e-71 274.2 628 37.1
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 3.3e-71 274.2 966 30.2
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 2.1e-70 271.6 443 41.1
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.4e-69 268.9 746 34.7
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 3.4e-68 264.2 615 36.1
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 6.5e-67 260.0 684 38.3
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 5.5e-66 256.9 610 35.7
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.3e-64 252.3 394 40.9
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 3.4e-52 211.1 610 31.0
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 3.4e-52 211.1 610 31.0
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 7.7e-44 183.3 349 40.7
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 5.0e-35 154.1 445 34.4
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 5.5e-34 150.6 586 37.0
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 4.7e-33 147.5 396 34.3
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 6.3e-30 137.1 297 36.7
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.3e-27 129.4 159 50.9
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 2.6e-23 115.2 131 48.1
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.8e-21 109.0 524 33.2
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 2.9e-19 101.7 221 37.6
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 3.8e-19 101.3 204 38.2
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 3.0e-16 91.7 156 42.9
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.0e-11 76.6 141 42.6
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 1.5e-10 72.8 47 72.3
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 5.6e-10 70.9 119 41.2
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 3.6e-09 68.2 124 37.9


User provided reference genes

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