Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3766 Capsella rubella HOM05D006919 ORTHO05D008705 2.2e-180 635.6 328 100.0
AT1G48550 Arabidopsis thaliana HOM05D006919 ORTHO05D008705 4.6e-175 617.8 328 96.0
AL1G55190 Arabidopsis lyrata HOM05D006919 ORTHO05D008705 1.0e-174 616.7 328 96.0
Thhalv10012210m.g Eutrema salsugineum HOM05D006919 ORTHO05D008705 9.1e-171 603.6 325 94.2
Sp1g35490 Schrenkiella parvula HOM05D006919 ORTHO05D008705 9.1e-171 603.6 322 95.0
C06p03070 Brassica napus HOM05D006919 ORTHO05D008705 1.2e-170 603.2 328 93.0
BolC6t35427H Brassica oleracea HOM05D006919 ORTHO05D008705 1.2e-170 603.2 328 93.0
BcaB07g33748 Brassica carinata HOM05D006919 ORTHO05D008705 1.0e-169 600.1 324 94.1
BcaC08g43045 Brassica carinata HOM05D006919 ORTHO05D008705 1.4e-168 596.3 334 91.3
A06p04410 Brassica napus HOM05D006919 ORTHO05D008705 1.9e-168 595.9 328 92.1
BraA06t23646Z Brassica rapa HOM05D006919 ORTHO05D008705 9.4e-168 593.6 330 92.1
Aa31LG10G5250 Aethionema arabicum HOM05D006919 ORTHO05D008705 2.6e-162 575.5 326 89.0
THA.LOC104820349 Tarenaya hassleriana HOM05D006919 ORTHO05D008705 3.1e-147 525.4 321 82.6
Atru.chr9.1714 Acer truncatum HOM05D006919 ORTHO05D008705 1.3e-137 493.4 317 75.4
Atru.chr9.1680 Acer truncatum HOM05D006919 ORTHO05D008705 6.8e-134 481.1 324 73.5
Potri.015G037600 Populus trichocarpa HOM05D006919 ORTHO05D008705 4.4e-133 478.4 318 73.9
Gohir.A07G060000 Gossypium hirsutum HOM05D006919 ORTHO05D008705 1.1e-131 473.8 318 71.7
Gorai.001G068200 Gossypium raimondii HOM05D006919 ORTHO05D008705 1.1e-131 473.8 318 71.7
MD06G1227700 Malus domestica HOM05D006919 ORTHO05D008705 1.1e-131 473.8 316 72.2
Prupe.5G234100 Prunus persica HOM05D006919 ORTHO05D008705 1.8e-131 473.0 316 72.5
Thecc.03G055400 Theobroma cacao HOM05D006919 ORTHO05D008705 1.8e-131 473.0 316 72.5
CiPaw.15G143800 Carya illinoinensis HOM05D006919 ORTHO05D008705 2.4e-131 472.6 316 71.8
Actinidia18895 Actinidia chinensis HOM05D006919 ORTHO05D008705 4.1e-131 471.9 316 71.8
Duzib205G1348 Durio zibethinus HOM05D006919 ORTHO05D008705 4.1e-131 471.9 319 71.2
Gohir.D07G064700 Gossypium hirsutum HOM05D006919 ORTHO05D008705 5.4e-131 471.5 318 71.4
TWI81G0447 Tripterygium wilfordii HOM05D006919 ORTHO05D008705 3.5e-130 468.8 317 73.5
QL10p029823 Quercus lobata HOM05D006919 ORTHO05D008705 5.0e-129 464.9 316 71.5
CSS0007871 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 6.6e-129 464.5 320 71.6
Dinv08205 Davidia involucrata HOM05D006919 ORTHO05D008705 8.6e-129 464.2 316 72.5
Medtr6g069620 Medicago truncatula HOM05D006919 ORTHO05D008705 2.5e-128 462.6 315 73.0
PGR083G2730 Punica granatum HOM05D006919 ORTHO05D008705 2.5e-128 462.6 315 69.8
Phvul.004G150300 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 5.6e-128 461.5 316 71.5
Phvul.004G149400 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 7.3e-128 461.1 316 71.8
CANSAT80G0223 Cannabis sativa HOM05D006919 ORTHO05D008705 9.5e-128 460.7 315 71.1
COL.COLO4_04912 Corchorus olitorius HOM05D006919 ORTHO05D008705 9.5e-128 460.7 321 70.1
Lalb_Chr24g0398171 Lupinus albus HOM05D006919 ORTHO05D008705 2.1e-127 459.5 316 70.6
TAR629G0573 Trochodendron aralioides HOM05D006919 ORTHO05D008705 2.1e-127 459.5 321 71.0
RcHm_v2.0_Chr7g0178261 Rosa chinensis HOM05D006919 ORTHO05D008705 3.1e-126 455.7 316 69.0
Nn4g24311 Nelumbo nucifera HOM05D006919 ORTHO05D008705 4.0e-126 455.3 320 70.6
TPR.G8644 Trifolium pratense HOM05D006919 ORTHO05D008705 8.9e-126 454.1 315 71.1
CsaV3_1G007200 Cucumis sativus L. HOM05D006919 ORTHO05D008705 2.0e-125 453.0 317 69.7
FvH4_5g17430 Fragaria vesca HOM05D006919 ORTHO05D008705 4.4e-125 451.8 317 69.1
Glyma.07G102800 Glycine max HOM05D006919 ORTHO05D008705 7.5e-125 451.1 319 70.5
Psat1g030800 Pisum sativum HOM05D006919 ORTHO05D008705 9.8e-125 450.7 315 70.5
Sopen03g037620 Solanum pennellii HOM05D006919 ORTHO05D008705 9.8e-125 450.7 316 70.3
CAN.G843.52 Capsicum annuum HOM05D006919 ORTHO05D008705 2.2e-124 449.5 316 70.9
AUR62020416 Chenopodium quinoa HOM05D006919 ORTHO05D008705 8.3e-124 447.6 315 70.5
PGSC0003DMG402005674 Solanum tuberosum HOM05D006919 ORTHO05D008705 1.1e-123 447.2 316 70.3
arahy.Tifrunner.gnm1.ann1.CTKR59 Arachis hypogaea HOM05D006919 ORTHO05D008705 3.2e-123 445.7 316 68.7
Lj2g0027212 Lotus japonicus HOM05D006919 ORTHO05D008705 9.2e-123 444.1 303 71.9
Aqoxy3G04092 Aquilegia oxysepala HOM05D006919 ORTHO05D008705 1.7e-121 439.9 315 67.6
Migut.D01529 Erythranthe guttata HOM05D006919 ORTHO05D008705 1.5e-120 436.8 316 67.1
Sed0003421 Sechium edule HOM05D006919 ORTHO05D008705 1.5e-120 436.8 302 70.5
FAN13G2797 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.9e-120 436.4 305 68.5
MSTRG.9306 Avicennia marina HOM05D006919 ORTHO05D008705 3.3e-120 435.6 315 67.0
GSVIVG01008449001 Vitis vinifera HOM05D006919 ORTHO05D008705 3.3e-120 435.6 316 66.1
Cc04_g06200 Coffea canephora HOM05D006919 ORTHO05D008705 7.3e-120 434.5 323 66.6
FAN08G0969 Fragaria x ananassa HOM05D006919 ORTHO05D008705 9.5e-120 434.1 305 68.2
Migut.D01538 Erythranthe guttata HOM05D006919 ORTHO05D008705 2.1e-119 433.0 316 66.8
Solyc03g118660.3 Solanum lycopersicum HOM05D006919 ORTHO05D008705 6.2e-119 431.4 303 69.3
FAN04G0116 Fragaria x ananassa HOM05D006919 ORTHO05D008705 5.2e-118 428.3 306 67.6
Oeu026273.1 Olea europaea HOM05D006919 ORTHO05D008705 5.2e-118 428.3 314 67.5
Cpa.g.sc3.392 Carica papaya HOM05D006919 ORTHO05D008705 8.9e-118 427.6 337 64.7
AUR62015799 Chenopodium quinoa HOM05D006919 ORTHO05D008705 2.6e-117 426.0 296 70.9
arahy.Tifrunner.gnm1.ann1.95HZXM Arachis hypogaea HOM05D006919 ORTHO05D008705 2.2e-116 422.9 363 60.3
VMungo0464G0753 Vigna mungo HOM05D006919 ORTHO05D008705 8.3e-116 421.0 316 67.4
Ciclev10010588m.g Citrus clementina HOM05D006919 ORTHO05D008705 1.1e-115 420.6 322 66.8
PSO063G3076 Papaver somniferum HOM05D006919 ORTHO05D008705 5.4e-115 418.3 316 65.2
ATR1100G039 Amborella trichopoda HOM05D006919 ORTHO05D008705 1.2e-114 417.2 319 64.3
ECA233G0189 Erigeron canadensis HOM05D006919 ORTHO05D008705 1.2e-114 417.2 312 66.3
Hund01978 Selenicereus undatus HOM05D006919 ORTHO05D008705 7.8e-114 414.5 308 66.9
HanXRQChr05g0142681 Helianthus annuus HOM05D006919 ORTHO05D008705 1.3e-113 413.7 316 65.2
CSS0013537 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 2.5e-112 409.5 320 65.6
Manes.06G005400 Manihot esculenta HOM05D006919 ORTHO05D008705 5.6e-112 408.3 270 73.7
Lsat_1_v5_gn_8_720 Lactuca sativa HOM05D006919 ORTHO05D008705 6.2e-111 404.8 302 66.9
Nitab4.5_0013135g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 8.4e-108 394.4 269 73.2
PSO754G0044 Papaver somniferum HOM05D006919 ORTHO05D008705 5.4e-107 391.7 316 60.4
FAN18G1663 Fragaria x ananassa HOM05D006919 ORTHO05D008705 2.7e-106 389.4 305 63.6
arahy.Tifrunner.gnm1.ann1.2R737Y Arachis hypogaea HOM05D006919 ORTHO05D008705 1.0e-105 387.5 316 62.3
EL10Ac4g07782 Beta vulgaris HOM05D006919 ORTHO05D008705 1.0e-105 387.5 316 63.9
QL10p030230 Quercus lobata HOM05D006919 ORTHO05D008705 5.1e-105 385.2 297 64.3
CARHR038160 Cardamine hirsuta HOM05D006919 ORTHO05D008705 8.6e-105 384.4 202 94.1
arahy.Tifrunner.gnm1.ann1.54PB3V Arachis hypogaea HOM05D006919 ORTHO05D008705 1.9e-99 366.7 337 57.6
HPP92_023812 Vanilla planifolia HOM05D006919 ORTHO05D008705 1.9e-99 366.7 314 60.5
ClCG04G010590 Citrullus lanatus HOM05D006919 ORTHO05D008705 2.3e-97 359.8 313 60.4
MELO3C002137.2 Cucumis melo HOM05D006919 ORTHO05D008705 6.6e-97 358.2 255 70.2
Ca_25336_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 6.2e-95 351.7 270 66.3
Ca_29640_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 6.2e-95 351.7 270 66.3
Peaxi162Scf00314g00331 Petunia axillaris HOM05D006919 ORTHO05D008705 4.0e-94 349.0 246 67.5
AagrBONN_evm.TU.Sc2ySwM_344.2286 Anthoceros agrestis HOM05D006919 ORTHO05D008705 1.9e-88 330.1 313 52.4
Eucgr.B00878 Eucalyptus grandis HOM05D006919 ORTHO05D008705 3.6e-87 325.9 232 66.4
Mapoly0012s0164 Marchantia polymorpha HOM05D006919 ORTHO05D008705 1.2e-85 320.9 320 50.3
vmacro16410 Vaccinium macrocarpon HOM05D006919 ORTHO05D008705 1.9e-83 313.5 256 62.1
Pp3c2_29770 Physcomitrium patens HOM05D006919 ORTHO05D008705 3.7e-79 299.3 314 45.9
Nitab4.5_0012026g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 4.8e-79 298.9 212 67.0
Pp3c1_6570 Physcomitrium patens HOM05D006919 ORTHO05D008705 4.8e-79 298.9 314 46.8
CDE08G0345 Ceratophyllum demersum HOM05D006919 ORTHO05D008705 6.2e-79 298.5 316 50.6
MBI09_g15241_MAGBIO Magnolia biondii HOM05D006919 ORTHO05D008705 9.6e-72 274.6 216 63.4
Glyma.U031615 Glycine max HOM05D006919 ORTHO05D008705 1.6e-71 273.9 180 71.7
AagrBONN_evm.TU.Sc2ySwM_228.5103 Anthoceros agrestis HOM05D006919 ORTHO05D008705 2.0e-69 266.9 303 45.5
SMO143G0218 Selaginella moellendorffii HOM05D006919 ORTHO05D008705 2.9e-68 263.1 268 51.5
Eucgr.B00996 Eucalyptus grandis HOM05D006919 ORTHO05D008705 1.9e-67 260.4 232 56.0
Haze_18872 Corylus avellana HOM05D006919 ORTHO05D008705 9.7e-64 248.1 330 44.8
CBR_g44935 Chara braunii HOM05D006919 ORTHO05D008705 4.4e-56 222.6 315 41.0
Cfa019651 Carpinus fangiana HOM05D006919 ORTHO05D008705 3.6e-50 203.0 145 67.6
RcHm_v2.0_Chr5g0035741 Rosa chinensis HOM05D006919 ORTHO05D008705 3.2e-43 179.9 127 64.6
RcHm_v2.0_Chr7g0224581 Rosa chinensis HOM05D006919 ORTHO05D008705 5.2e-41 172.6 129 63.6
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 2.8e-39 166.8 228 41.7
Lj9A419G30 Lonicera japonica HOM05D006919 ORTHO05D008705 4.4e-32 142.9 247 36.0
arahy.Tifrunner.gnm1.ann1.248BIT Arachis hypogaea HOM05D006919 ORTHO05D008705 3.1e-30 136.7 103 64.1
RcHm_v2.0_Chr7g0212051 Rosa chinensis HOM05D006919 ORTHO05D008705 4.1e-22 109.8 87 62.1
CBR_g74660 Chara braunii HOM05D006919 ORTHO05D008705 1.2e-21 108.2 179 36.9
SEGI_02358 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 2.7e-21 107.1 93 55.9
Lj9C419T19 Lonicera japonica HOM05D006919 ORTHO05D008705 8.6e-20 102.1 69 76.8
SEGI_39350 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 7.5e-08 62.4 70 48.6
ECA233G3510 Erigeron canadensis HOM05D015936 ORTHO05D022524 4.1e-06 56.6 44 56.8
CSS0046000 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D004872 9.2e-06 55.5 43 62.8


User provided reference genes

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