Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 1.7e-152 542.7 286 100.0
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 9.8e-129 463.8 285 85.6
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 3.4e-121 438.7 285 81.4
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.9e-116 422.9 289 79.6
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 4.6e-110 401.7 288 75.3
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.7e-109 399.8 288 76.7
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 1.5e-105 386.7 290 74.1
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 4.4e-105 385.2 286 73.8
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 4.4e-105 385.2 290 73.8
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 3.7e-104 382.1 286 73.4
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 2.1e-102 376.3 290 72.4
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 2.3e-101 372.9 266 75.6
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 1.9e-87 326.6 270 68.1
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 1.0e-85 320.9 269 67.7
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 3.9e-77 292.4 300 59.3
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 8.7e-77 291.2 304 58.9
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 1.9e-76 290.0 298 58.1
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 8.1e-75 284.6 183 84.2
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.5e-73 280.4 291 57.4
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 4.5e-73 278.9 287 58.2
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 9.9e-73 277.7 293 58.0
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 9.9e-73 277.7 293 58.0
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 9.9e-73 277.7 293 58.0
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 1.7e-72 276.9 293 58.0
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 1.7e-72 276.9 294 57.8
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.1e-71 274.2 323 53.3
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 2.1e-70 270.0 289 56.1
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 6.0e-70 268.5 287 57.1
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 1.2e-65 254.2 196 71.9
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 1.1e-58 231.1 183 69.9
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 3.1e-58 229.6 288 50.0
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 3.0e-53 213.0 174 67.8
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 3.0e-53 213.0 174 67.8
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 1.4e-50 204.1 169 66.9
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 1.3e-43 181.0 140 70.0
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 3.7e-43 179.5 139 69.8
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 4.8e-43 179.1 140 69.3
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 1.8e-34 150.6 286 37.1
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 4.1e-34 149.4 311 33.8
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 2.6e-33 146.7 119 65.5
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 2.2e-32 143.7 174 52.3
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 5.0e-32 142.5 256 36.3
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 4.2e-31 139.4 287 37.3
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 4.2e-31 139.4 142 58.5
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 4.2e-31 139.4 142 58.5
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 2.7e-30 136.7 237 35.9
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 3.6e-30 136.3 299 34.4
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 3.6e-30 136.3 242 38.0
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 4.7e-30 136.0 297 34.7
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 6.1e-30 135.6 307 31.9
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 8.0e-30 135.2 258 36.0
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 8.0e-30 135.2 297 35.0
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.8e-29 134.0 296 34.1
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 2.3e-29 133.7 302 34.4
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 2.3e-29 133.7 294 34.4
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 3.0e-29 133.3 299 34.1
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 4.0e-29 132.9 309 32.0
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 4.0e-29 132.9 251 35.5
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 8.8e-29 131.7 242 34.7
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 8.8e-29 131.7 303 31.7
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 2.0e-28 130.6 226 36.3
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 4.4e-28 129.4 316 32.3
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 5.7e-28 129.0 301 35.5
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 5.7e-28 129.0 248 37.5
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 9.7e-28 128.3 276 33.7
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 1.3e-27 127.9 309 33.3
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 1.3e-27 127.9 306 34.6
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 1.7e-27 127.5 266 35.3
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 2.2e-27 127.1 312 33.0
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 6.3e-27 125.6 262 34.7
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 8.2e-27 125.2 269 34.9
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 1.1e-26 124.8 238 36.1
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 2.4e-26 123.6 265 32.8
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 2.4e-26 123.6 243 34.6
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 2.4e-26 123.6 303 33.0
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 3.1e-26 123.2 245 35.5
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 3.1e-26 123.2 236 37.3
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 5.3e-26 122.5 292 34.6
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 9.1e-26 121.7 224 35.7
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 1.6e-25 120.9 264 33.7
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.6e-25 120.9 303 34.0
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 2.7e-25 120.2 253 33.6
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 2.7e-25 120.2 311 30.2
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 3.5e-25 119.8 280 30.7
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 4.5e-25 119.4 244 36.5
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 4.5e-25 119.4 238 35.3
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 5.9e-25 119.0 279 34.8
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 5.9e-25 119.0 266 32.7
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 5.9e-25 119.0 313 30.4
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 5.9e-25 119.0 355 29.6
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 7.7e-25 118.6 304 32.2
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 7.7e-25 118.6 245 33.5
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 7.7e-25 118.6 254 36.6
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 1.0e-24 118.2 312 30.1
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 1.3e-24 117.9 317 32.2
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.2e-24 117.1 272 31.6
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 2.9e-24 116.7 242 35.1
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 5.0e-24 115.9 247 33.6
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 6.5e-24 115.5 268 33.2
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 6.5e-24 115.5 252 32.9
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 6.5e-24 115.5 278 30.9
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 8.5e-24 115.2 317 30.3
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.1e-23 114.8 359 29.0
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.1e-23 114.8 247 35.6
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 1.5e-23 114.4 236 33.9
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.9e-23 114.0 249 31.7
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.9e-23 114.0 272 30.5
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.5e-23 113.6 317 30.3
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 3.2e-23 113.2 300 31.0
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 3.2e-23 113.2 254 33.9
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 3.2e-23 113.2 271 33.2
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 5.5e-23 112.5 272 33.5
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.2e-22 111.3 367 27.8
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.2e-22 111.3 362 28.2
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 1.2e-22 111.3 275 32.7
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 1.6e-22 110.9 253 32.0
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 1.6e-22 110.9 280 30.0
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 2.7e-22 110.2 280 29.6
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 2.7e-22 110.2 274 31.0
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 3.6e-22 109.8 285 30.5
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 8.0e-22 108.6 268 31.3
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 1.4e-21 107.8 226 32.7
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 3.0e-21 106.7 271 32.8
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 3.0e-21 106.7 270 30.7
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 6.8e-21 105.5 233 33.5
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 6.8e-21 105.5 247 31.6
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 6.8e-21 105.5 257 32.3
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 3.4e-20 103.2 250 31.6
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 7.5e-20 102.1 323 31.0
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 9.8e-20 101.7 223 32.3
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 9.8e-20 101.7 242 33.1
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 2.4e-18 97.1 291 30.9
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 1.0e-16 91.7 269 30.1
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 1.3e-16 91.3 188 33.0
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 1.7e-16 90.9 196 34.7
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 2.2e-16 90.5 270 30.4
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 7.2e-15 85.5 256 28.5
BcaB04g17431 Brassica carinata HOM05D004919 ORTHO05D005994 2.8e-14 83.6 80 63.8
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 2.8e-14 83.6 242 29.8
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 2.3e-13 80.5 252 29.8
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 7.5e-12 75.5 227 29.1
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 8.3e-11 72.0 239 28.9
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 1.1e-10 71.6 169 35.5
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 4.1e-10 69.7 260 28.8
BcaB04g17433 Brassica carinata HOM05D004919 ORTHO05D005994 1.2e-09 68.2 64 62.5
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 2.0e-09 67.4 229 25.8
A05p00110 Brassica napus HOM05D000592 ORTHO05D000900 2.1e-06 57.4 146 30.1
BraA05t19007Z Brassica rapa HOM05D000592 ORTHO05D000900 2.1e-06 57.4 146 30.1


User provided reference genes

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