Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.7e-38 162.2 81 100.0
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.4e-32 142.5 81 92.6
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.8e-32 142.1 81 92.6
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 7.0e-32 140.2 81 90.1
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 7.0e-32 140.2 81 90.1
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-31 139.0 81 90.1
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 1.6e-31 139.0 81 90.1
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 1.6e-31 139.0 81 90.1
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.6e-31 139.0 81 90.1
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 2.0e-31 138.7 81 88.9
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 2.0e-31 138.7 81 88.9
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 2.0e-31 138.7 81 88.9
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.7e-31 138.3 81 87.7
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 2.7e-31 138.3 79 88.6
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 2.7e-31 138.3 79 88.6
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 2.7e-31 138.3 79 88.6
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 3.5e-31 137.9 81 88.9
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-30 136.3 81 88.9
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-30 134.8 79 88.6
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 3.8e-30 134.4 81 86.4
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 3.8e-30 134.4 81 86.4
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 5.6e-29 130.6 80 85.0
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 9.5e-29 129.8 79 82.3
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 9.5e-29 129.8 81 81.5
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-28 129.4 81 84.0
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-28 129.4 81 84.0
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 3.6e-28 127.9 81 82.7
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 3.6e-28 127.9 81 82.7
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 3.6e-28 127.9 81 82.7
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 4.7e-28 127.5 83 81.9
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 4.7e-28 127.5 81 81.5
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 4.7e-28 127.5 81 82.7
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.8e-27 125.6 82 81.7
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 3.0e-27 124.8 81 80.2
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 4.0e-27 124.4 82 80.5
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 5.2e-27 124.0 85 77.6
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 8.9e-27 123.2 83 79.5
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 8.9e-27 123.2 83 79.5
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.5e-26 122.5 81 76.5
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 1.5e-26 122.5 82 80.5
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 1.5e-26 122.5 82 80.5
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 1.5e-26 122.5 82 80.5
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 1.5e-26 122.5 82 80.5
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 1.5e-26 122.5 82 80.5
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 4.4e-26 120.9 82 79.3
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 2.3e-19 98.6 77 66.2
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 8.3e-17 90.1 81 64.2
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.4e-16 88.6 82 63.4
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 3.2e-16 88.2 81 60.5
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.2e-16 88.2 77 62.3
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 3.2e-16 88.2 81 59.3
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 7.0e-16 87.0 81 61.7
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 9.2e-16 86.7 81 61.7
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 1.2e-15 86.3 81 64.2
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 1.6e-15 85.9 83 57.8
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 2.0e-15 85.5 81 60.5
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 2.7e-15 85.1 81 58.0
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.7e-15 85.1 81 63.0
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 4.6e-15 84.3 81 59.3
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 6.0e-15 84.0 80 56.2
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 7.8e-15 83.6 81 58.0
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 7.8e-15 83.6 82 56.1
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 7.8e-15 83.6 75 60.0
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 1.7e-14 82.4 83 55.4
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.3e-14 82.0 81 55.6
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.3e-14 82.0 75 58.7
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 2.3e-14 82.0 75 58.7
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 2.3e-14 82.0 74 56.8
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.0e-14 81.6 74 59.5
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 3.0e-14 81.6 74 58.1
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 3.0e-14 81.6 74 58.1
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 3.9e-14 81.3 74 58.1
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 3.9e-14 81.3 81 59.3
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 3.9e-14 81.3 74 58.1
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 5.0e-14 80.9 81 53.1
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 5.0e-14 80.9 74 58.1
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 5.0e-14 80.9 81 58.0
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 5.0e-14 80.9 75 61.3
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 6.6e-14 80.5 75 57.3
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 8.6e-14 80.1 75 58.7
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.1e-13 79.7 72 59.7
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.1e-13 79.7 78 56.4
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.5e-13 79.3 79 53.2
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 1.5e-13 79.3 82 57.3
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 1.5e-13 79.3 83 55.4
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.9e-13 79.0 81 56.8
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-13 79.0 82 58.5
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.9e-13 79.0 80 61.2
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.9e-13 79.0 80 60.0
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.9e-13 79.0 81 56.8
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 3.3e-13 78.2 83 56.6
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 3.3e-13 78.2 82 58.5
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.3e-13 78.2 82 58.5
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 4.3e-13 77.8 74 56.8
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 5.6e-13 77.4 82 57.3
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 7.3e-13 77.0 76 55.3
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 7.3e-13 77.0 82 58.5
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 7.3e-13 77.0 74 52.7
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 9.5e-13 76.6 75 52.0
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 9.5e-13 76.6 75 56.0
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.2e-12 76.3 74 58.1
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 2.1e-12 75.5 83 54.2
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 2.1e-12 75.5 76 55.3
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 3.6e-12 74.7 82 53.7
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 3.6e-12 74.7 81 51.9
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 4.7e-12 74.3 81 53.1
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 4.7e-12 74.3 82 54.9
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 8.1e-12 73.6 78 53.8
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 8.1e-12 73.6 72 54.2
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 8.1e-12 73.6 74 58.1
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 8.1e-12 73.6 72 50.0
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.1e-11 73.2 82 51.2
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 1.1e-11 73.2 72 54.2
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.8e-11 72.4 75 50.7
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.8e-11 72.4 81 50.6
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 2.3e-11 72.0 85 51.8
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 2.3e-11 72.0 78 50.0
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 4.0e-11 71.2 81 50.6
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 5.2e-11 70.9 76 55.3
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 6.8e-11 70.5 81 54.3
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 8.9e-11 70.1 71 53.5
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 2.0e-10 68.9 82 50.0
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 2.6e-10 68.6 77 49.4
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 4.4e-10 67.8 77 45.5
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 4.4e-10 67.8 71 52.1
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 5.8e-10 67.4 72 48.6
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 5.8e-10 67.4 82 50.0
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 7.5e-10 67.0 86 50.0
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.7e-09 65.9 82 45.1
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.9e-09 65.1 72 48.6
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 6.4e-09 63.9 74 47.3
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 8.3e-09 63.5 72 47.2
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.4e-08 62.8 71 50.7
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.4e-08 62.0 73 43.8
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.4e-08 62.0 72 48.6
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 3.2e-08 61.6 73 47.9
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 3.2e-08 61.6 74 45.9
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.1e-08 61.2 74 43.2
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 9.2e-08 60.1 75 45.3
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 2.1e-07 58.9 70 51.4
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 2.7e-07 58.5 62 51.6
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 6.0e-07 57.4 73 41.1
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.3e-06 55.5 77 45.5
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 2.3e-06 55.5 82 39.0
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.9e-06 54.7 77 45.5
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 5.1e-06 54.3 74 39.2


User provided reference genes

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