Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3724 Capsella rubella HOM05D006090 ORTHO05D007600 8.9e-44 179.9 90 100.0
CARHR037780 Cardamine hirsuta HOM05D006090 ORTHO05D007600 2.9e-42 174.9 90 93.3
BcaB04g17463 Brassica carinata HOM05D006090 ORTHO05D007600 6.4e-42 173.7 90 93.3
AT1G48140 Arabidopsis thaliana HOM05D006090 ORTHO05D007600 8.3e-42 173.3 90 93.3
AL1G54720 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 1.1e-41 172.9 90 92.2
BcaC07g37170 Brassica carinata HOM05D006090 ORTHO05D007600 1.4e-41 172.6 90 92.2
C08p05430 Brassica napus HOM05D006090 ORTHO05D007600 1.4e-41 172.6 90 92.2
BolC8t47360H Brassica oleracea HOM05D006090 ORTHO05D007600 1.4e-41 172.6 90 92.2
Thhalv10011899m.g Eutrema salsugineum HOM05D006090 ORTHO05D007600 1.4e-41 172.6 90 92.2
BraA08t32537Z Brassica rapa HOM05D006090 ORTHO05D007600 3.2e-41 171.4 90 92.2
Sp1g35110 Schrenkiella parvula HOM05D006090 ORTHO05D007600 4.1e-41 171.0 90 91.1
A08p05190 Brassica napus HOM05D006090 ORTHO05D007600 2.0e-40 168.7 90 91.1
THA.LOC104802658 Tarenaya hassleriana HOM05D006090 ORTHO05D007600 1.9e-38 162.2 90 85.6
BcaC08g43006 Brassica carinata HOM05D006090 ORTHO05D007600 3.6e-37 157.9 91 84.6
C06p02550 Brassica napus HOM05D006090 ORTHO05D007600 3.6e-37 157.9 91 84.6
MD05G1171700 Malus domestica HOM05D006090 ORTHO05D007600 3.6e-37 157.9 87 85.1
Aa31LG10G5590 Aethionema arabicum HOM05D006090 ORTHO05D007600 4.7e-37 157.5 97 80.4
Gohir.D07G205600 Gossypium hirsutum HOM05D006090 ORTHO05D007600 4.7e-37 157.5 90 80.0
Gohir.A07G199200 Gossypium hirsutum HOM05D006090 ORTHO05D007600 6.2e-37 157.1 90 81.1
BolC6t35383H Brassica oleracea HOM05D006090 ORTHO05D007600 8.0e-37 156.8 91 84.6
Gorai.001G231600 Gossypium raimondii HOM05D006090 ORTHO05D007600 8.0e-37 156.8 90 80.0
FvH4_2g18550 Fragaria vesca HOM05D006090 ORTHO05D007600 2.3e-36 155.2 87 82.8
FAN15G1212 Fragaria x ananassa HOM05D006090 ORTHO05D007600 2.3e-36 155.2 87 82.8
MD10G1159900 Malus domestica HOM05D006090 ORTHO05D007600 2.3e-36 155.2 86 84.9
Manes.06G087700 Manihot esculenta HOM05D006090 ORTHO05D007600 2.3e-36 155.2 90 81.1
Hma1.2p1_0052F.1_g030080 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 3.1e-36 154.8 90 80.0
Prupe.8G199000 Prunus persica HOM05D006090 ORTHO05D007600 4.0e-36 154.5 87 80.5
RcHm_v2.0_Chr6g0284111 Rosa chinensis HOM05D006090 ORTHO05D007600 8.9e-36 153.3 87 80.5
ECA248G3406 Erigeron canadensis HOM05D006090 ORTHO05D007600 1.2e-35 152.9 90 76.7
PGR044G2731 Punica granatum HOM05D006090 ORTHO05D007600 3.4e-35 151.4 90 77.8
Cc06_g17130 Coffea canephora HOM05D006090 ORTHO05D007600 5.8e-35 150.6 90 78.9
CSS0021939 Camellia sinensis var. sinensis HOM05D006090 ORTHO05D007600 9.8e-35 149.8 88 76.1
Potri.002G245800 Populus trichocarpa HOM05D006090 ORTHO05D007600 9.8e-35 149.8 90 78.9
Dinv19173 Davidia involucrata HOM05D006090 ORTHO05D007600 1.7e-34 149.1 90 76.7
Nn8g41078 Nelumbo nucifera HOM05D006090 ORTHO05D007600 1.7e-34 149.1 90 77.8
Sp3g06170 Schrenkiella parvula HOM05D006090 ORTHO05D007600 1.7e-34 149.1 88 77.3
Thecc.02G015400 Theobroma cacao HOM05D006090 ORTHO05D007600 1.7e-34 149.1 90 77.8
TWI18G0803 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 1.7e-34 149.1 90 76.7
Aa31LG5G17800 Aethionema arabicum HOM05D006090 ORTHO05D007600 2.2e-34 148.7 90 76.7
Medtr7g056250 Medicago truncatula HOM05D006090 ORTHO05D007600 2.2e-34 148.7 90 76.7
vmacro14732 Vaccinium macrocarpon HOM05D006090 ORTHO05D007600 2.2e-34 148.7 87 79.3
BcaB07g33788 Brassica carinata HOM05D006090 ORTHO05D007600 3.7e-34 147.9 94 77.7
Glyma.08G349000 Glycine max HOM05D006090 ORTHO05D007600 3.7e-34 147.9 90 76.7
MBI04_g03342_MAGBIO Magnolia biondii HOM05D006090 ORTHO05D007600 3.7e-34 147.9 90 75.6
Psat3g148760 Pisum sativum HOM05D006090 ORTHO05D007600 3.7e-34 147.9 90 76.7
Rhsim01G0252800 Rhododendron simsii HOM05D006090 ORTHO05D007600 3.7e-34 147.9 90 77.8
HanXRQChr01g0015271 Helianthus annuus HOM05D006090 ORTHO05D007600 4.9e-34 147.5 90 76.7
PSO170G6116 Papaver somniferum HOM05D006090 ORTHO05D007600 6.4e-34 147.1 90 75.6
PSO445G0009 Papaver somniferum HOM05D006090 ORTHO05D007600 8.3e-34 146.7 90 75.6
TPR.G6479 Trifolium pratense HOM05D006090 ORTHO05D007600 8.3e-34 146.7 90 73.3
CANSAT21G0941 Cannabis sativa HOM05D006090 ORTHO05D007600 1.4e-33 146.0 87 78.2
CiPaw.01G050400 Carya illinoinensis HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 78.9
ClCG10G009020 Citrullus lanatus HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 73.3
Duzib211G0047 Durio zibethinus HOM05D006090 ORTHO05D007600 1.9e-33 145.6 87 77.0
Duzib211G0371 Durio zibethinus HOM05D006090 ORTHO05D007600 1.9e-33 145.6 87 77.0
Ca_06547_v3 Cicer arietinum L. HOM05D006090 ORTHO05D007600 2.4e-33 145.2 90 73.3
FAN24G0022 Fragaria x ananassa HOM05D006090 ORTHO05D007600 2.4e-33 145.2 100 71.0
Atru.chr6.1016 Acer truncatum HOM05D006090 ORTHO05D007600 4.1e-33 144.4 89 71.9
BcaB04g21317 Brassica carinata HOM05D006090 ORTHO05D007600 4.1e-33 144.4 88 75.0
Thecc.01G220300 Theobroma cacao HOM05D006090 ORTHO05D007600 4.1e-33 144.4 87 77.0
Hma1.2p1_0226F.1_g095400 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 5.4e-33 144.1 90 75.6
Lsat_1_v5_gn_8_5041 Lactuca sativa HOM05D006090 ORTHO05D007600 5.4e-33 144.1 90 73.3
Lalb_Chr03g0041481 Lupinus albus HOM05D006090 ORTHO05D007600 9.2e-33 143.3 88 75.0
Oeu051534.1 Olea europaea HOM05D006090 ORTHO05D007600 9.2e-33 143.3 90 72.2
TAR362G1026 Trochodendron aralioides HOM05D006090 ORTHO05D007600 9.2e-33 143.3 90 73.3
Lj5g0019908 Lotus japonicus HOM05D006090 ORTHO05D007600 1.2e-32 142.9 88 73.9
TWI36G1609 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 1.2e-32 142.9 88 73.9
BNapus_Darmor_BZH_scaffold_109p00180 Brassica napus HOM05D006090 ORTHO05D007600 1.6e-32 142.5 88 76.1
Lj1g0010865 Lotus japonicus HOM05D006090 ORTHO05D007600 1.6e-32 142.5 88 72.7
SalBow6G1264 Salvia bowleyana HOM05D006090 ORTHO05D007600 1.6e-32 142.5 90 71.1
SalBow6G7055 Salvia bowleyana HOM05D006090 ORTHO05D007600 1.6e-32 142.5 90 71.1
Phvul.002G080700 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 2.7e-32 141.7 86 75.6
QL09p032732 Quercus lobata HOM05D006090 ORTHO05D007600 2.7e-32 141.7 89 77.5
Sed0025432 Sechium edule HOM05D006090 ORTHO05D007600 2.7e-32 141.7 90 72.2
Solyc01g005110.3 Solanum lycopersicum HOM05D006090 ORTHO05D007600 2.7e-32 141.7 90 72.2
Sopen01g001130 Solanum pennellii HOM05D006090 ORTHO05D007600 2.7e-32 141.7 90 72.2
Migut.N03342 Erythranthe guttata HOM05D006090 ORTHO05D007600 4.6e-32 141.0 90 72.2
Lsat_1_v5_gn_5_180801 Lactuca sativa HOM05D006090 ORTHO05D007600 4.6e-32 141.0 84 76.2
EL10Ac7g17901 Beta vulgaris HOM05D006090 ORTHO05D007600 1.0e-31 139.8 90 70.0
CAN.G282.104 Capsicum annuum HOM05D006090 ORTHO05D007600 2.3e-31 138.7 90 71.1
QL02p097583 Quercus lobata HOM05D006090 ORTHO05D007600 3.0e-31 138.3 89 74.2
TWI75G0179 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 3.0e-31 138.3 90 72.2
Phvul.002G081100 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 3.9e-31 137.9 90 73.3
Os02g0749450 Oryza sativa ssp. japonica HOM05D006090 ORTHO05D007600 6.6e-31 137.1 90 72.2
CAN.G151.21 Capsicum annuum HOM05D006090 ORTHO05D007600 8.6e-31 136.7 90 70.0
Peaxi162Scf01111g00025 Petunia axillaris HOM05D006090 ORTHO05D007600 8.6e-31 136.7 90 70.0
PGR004G1711 Punica granatum HOM05D006090 ORTHO05D007600 8.6e-31 136.7 89 70.8
Sed0016973 Sechium edule HOM05D006090 ORTHO05D007600 8.6e-31 136.7 86 72.1
Eucgr.A02241 Eucalyptus grandis HOM05D006090 ORTHO05D007600 1.1e-30 136.3 90 68.9
GSVIVG01028416001 Vitis vinifera HOM05D006090 ORTHO05D007600 1.5e-30 136.0 88 72.7
Nitab4.5_0014260g0010 Nicotiana tabacum HOM05D006090 ORTHO05D007600 3.3e-30 134.8 90 67.8
CDE09G0476 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 5.6e-30 134.0 90 66.7
Nitab4.5_0000521g0090 Nicotiana tabacum HOM05D006090 ORTHO05D007600 7.3e-30 133.7 90 66.7
Zm00001eb059180 Zea mays HOM05D006090 ORTHO05D007600 2.1e-29 132.1 90 70.0
Cpa.g.sc71.6 Carica papaya HOM05D006090 ORTHO05D007600 6.2e-29 130.6 84 75.0
arahy.Tifrunner.gnm1.ann1.NKLH1V Arachis hypogaea HOM05D006090 ORTHO05D007600 8.9e-28 126.7 86 70.9
unitig_8.g4837 Utricularia gibba HOM05D006090 ORTHO05D007600 8.9e-28 126.7 90 67.8
arahy.Tifrunner.gnm1.ann1.7I8V6Q Arachis hypogaea HOM05D006090 ORTHO05D007600 1.2e-27 126.3 86 69.8
Ciclev10023078m.g Citrus clementina HOM05D006090 ORTHO05D007600 1.2e-27 126.3 76 72.4
Medtr3g437420 Medicago truncatula HOM05D006090 ORTHO05D007600 2.6e-27 125.2 70 81.4
HPP92_023706 Vanilla planifolia HOM05D006090 ORTHO05D007600 5.8e-27 124.0 87 69.0
Cpa.g.sc428.3 Carica papaya HOM05D006090 ORTHO05D007600 1.3e-26 122.9 70 80.0
Duzib138G1257 Durio zibethinus HOM05D006090 ORTHO05D007600 1.3e-26 122.9 69 81.2
Haze_03967 Corylus avellana HOM05D006090 ORTHO05D007600 1.7e-26 122.5 97 61.9
PGSC0003DMG400022770 Solanum tuberosum HOM05D006090 ORTHO05D007600 2.9e-26 121.7 124 50.8
BraA01t04392Z Brassica rapa HOM05D006090 ORTHO05D007600 1.1e-25 119.8 68 85.3
MELO3C026729.2 Cucumis melo HOM05D006090 ORTHO05D007600 1.1e-25 119.8 70 80.0
Lj2C1126T3 Lonicera japonica HOM05D006090 ORTHO05D007600 6.0e-24 114.0 79 67.1
Rhsim13G0047700 Rhododendron simsii HOM05D006090 ORTHO05D007600 1.7e-23 112.5 71 78.9
Actinidia30052 Actinidia chinensis HOM05D006090 ORTHO05D007600 2.3e-23 112.1 68 76.5
Phvul.009G016400 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 8.6e-23 110.2 66 75.8
CDE02G0014 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 8.9e-20 100.1 69 63.8
Glyma.18G167500 Glycine max HOM05D006090 ORTHO05D007600 8.9e-20 100.1 58 79.3
Sabra02G0187100 Salix brachista HOM05D006090 ORTHO05D007600 8.9e-20 100.1 60 73.3
Eucgr.K03282 Eucalyptus grandis HOM05D006090 ORTHO05D007600 1.2e-19 99.8 57 78.9
CiPaw.02G023500 Carya illinoinensis HOM05D006090 ORTHO05D007600 1.3e-18 96.3 71 67.6
Haze_15253 Corylus avellana HOM05D006090 ORTHO05D007600 4.9e-18 94.4 77 61.0
Mapoly0057s0028 Marchantia polymorpha HOM05D006090 ORTHO05D007600 4.9e-18 94.4 89 55.1
TAR633G0277 Trochodendron aralioides HOM05D006090 ORTHO05D007600 3.9e-15 84.7 51 76.5
Pp3c20_9690 Physcomitrium patens HOM05D006090 ORTHO05D007600 6.6e-15 84.0 93 47.3
AagrBONN_evm.TU.Sc2ySwM_228.829 Anthoceros agrestis HOM05D006090 ORTHO05D007600 1.8e-12 75.9 90 47.8
arahy.Tifrunner.gnm1.ann1.L6G805 Arachis hypogaea HOM05D006090 ORTHO05D007600 5.8e-11 70.9 53 66.0
Nitab4.5_0001873g0080 Nicotiana tabacum HOM05D006090 ORTHO05D007600 1.4e-09 66.2 47 66.0
Carub.0003s0674 Capsella rubella HOM05D006090 ORTHO05D007600 1.3e-07 59.7 35 77.1
arahy.Tifrunner.gnm1.ann1.DI5ISS Arachis hypogaea HOM05D006090 ORTHO05D038896 6.6e-07 57.4 41 65.9
AUR62016546 Chenopodium quinoa HOM05D006090 ORTHO05D007600 1.5e-06 56.2 51 52.9
Aa31LG11G3540 Aethionema arabicum HOM05D006090 ORTHO05D007600 3.3e-06 55.1 34 67.6
arahy.Tifrunner.gnm1.ann1.3U8U6D Arachis hypogaea HOM05D054567 ORTHO05D007600 3.3e-06 55.1 33 69.7
AL3G18490 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 7.3e-06 53.9 40 60.0


User provided reference genes

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