Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 3.3e-127 458.4 229 100.0
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 5.3e-125 451.1 229 98.7
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 96.9
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 9.9e-124 446.8 229 97.8
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 96.5
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 96.5
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 96.5
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 96.5
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 96.5
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 94.3
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 4.6e-121 438.0 238 92.9
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 93.4
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 93.9
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 1.3e-120 436.4 229 93.9
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 3.9e-120 434.9 229 93.4
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 2.5e-119 432.2 229 93.0
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 5.6e-119 431.0 256 86.3
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 4.9e-115 417.9 229 89.5
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 4.9e-115 417.9 229 89.5
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.1e-114 416.8 227 89.9
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 87.7
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 9.3e-114 413.7 227 87.2
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.6e-113 412.9 229 87.8
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 88.1
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 2.1e-113 412.5 229 87.8
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 2.7e-113 412.1 227 87.2
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 87.3
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 3.5e-113 411.8 229 87.8
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 3.5e-113 411.8 227 87.2
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 7.9e-113 410.6 227 87.7
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 88.1
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 1.3e-112 409.8 229 87.3
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.3e-112 409.8 227 87.7
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.8e-112 409.5 229 86.9
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 86.3
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.3e-112 409.1 226 88.1
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.3e-112 409.1 226 88.1
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 85.5
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 87.2
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.0e-112 408.7 227 86.8
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 3.0e-112 408.7 227 87.2
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 3.0e-112 408.7 227 87.7
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 5.1e-112 407.9 229 86.9
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 5.1e-112 407.9 227 87.7
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 5.1e-112 407.9 229 86.9
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 6.7e-112 407.5 229 86.0
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 8.7e-112 407.1 227 86.3
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 8.7e-112 407.1 226 87.6
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 8.7e-112 407.1 227 87.2
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.1e-111 406.8 227 86.8
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 1.1e-111 406.8 227 87.7
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.1e-111 406.8 227 86.8
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.5e-111 406.4 229 85.6
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.5e-111 406.4 227 86.8
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 1.5e-111 406.4 227 86.8
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 1.9e-111 406.0 227 86.3
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.9e-111 406.0 227 86.8
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.9e-111 406.0 227 85.9
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 1.9e-111 406.0 229 86.0
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.9e-111 406.0 227 86.3
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 86.3
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 87.2
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 86.3
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.3e-111 405.2 227 87.2
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 3.3e-111 405.2 227 86.3
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 4.3e-111 404.8 227 86.3
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.3e-111 404.8 227 85.5
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 4.3e-111 404.8 227 85.9
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 5.6e-111 404.4 229 85.6
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 9.6e-111 403.7 227 85.9
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 9.6e-111 403.7 227 85.5
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.6e-110 402.9 229 85.2
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 85.5
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 4.8e-110 401.4 227 84.6
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 6.2e-110 401.0 227 85.0
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 1.1e-109 400.2 227 84.6
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.8e-109 399.4 229 83.8
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 5.3e-109 397.9 227 83.3
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 6.9e-109 397.5 229 83.8
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.0e-108 396.0 227 84.6
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 9.9e-108 393.7 227 84.1
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 1.3e-107 393.3 227 83.3
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 2.2e-107 392.5 229 83.8
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 4.9e-107 391.3 229 83.4
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 8.4e-107 390.6 227 83.3
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 1.4e-106 389.8 227 81.1
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.9e-106 389.4 220 85.5
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 4.2e-106 388.3 227 82.8
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 3.5e-105 385.2 229 80.3
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 6.0e-105 384.4 227 83.7
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 7.9e-105 384.0 229 80.3
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 5.1e-104 381.3 229 83.8
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 5.1e-104 381.3 227 81.9
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 8.7e-104 380.6 226 79.6
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.1e-103 380.2 227 83.3
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 1.5e-103 379.8 226 80.1
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 3.3e-103 378.6 227 79.3
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 3.1e-101 372.1 227 77.5
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 1.2e-97 360.1 227 74.9
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 7.9e-97 357.5 203 86.2
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 1.0e-96 357.1 202 85.6
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 1.8e-96 356.3 201 84.6
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 3.0e-96 355.5 227 74.0
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 5.1e-96 354.8 204 84.8
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 6.7e-96 354.4 227 77.5
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 1.1e-93 347.1 227 70.9
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 3.1e-93 345.5 210 78.1
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 6.9e-93 344.4 226 72.1
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 6.9e-93 344.4 226 72.1
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.2e-92 343.6 190 88.9
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 3.4e-92 342.0 189 87.3
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 4.5e-92 341.7 234 73.5
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 4.5e-92 341.7 200 83.0
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 5.9e-92 341.3 191 86.9
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 7.7e-92 340.9 190 86.8
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 3.8e-91 338.6 187 88.2
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 1.9e-90 336.3 197 84.3
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 1.2e-89 333.6 226 68.6
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 2.7e-89 332.4 185 88.1
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 4.6e-89 331.6 231 73.6
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 2.2e-86 322.8 227 72.7
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 6.9e-85 317.8 185 82.7
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.2e-82 308.9 162 94.4
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.6e-81 306.6 226 68.1
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 9.1e-77 290.8 162 86.4
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 3.5e-76 288.9 164 85.4
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 1.7e-75 286.6 160 85.6
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 3.2e-74 282.3 357 47.6
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.2e-60 237.3 131 87.8
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.7e-54 216.9 120 85.8
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 2.8e-54 216.1 154 66.9
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.5e-39 167.2 140 64.3
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.4e-29 134.0 69 97.1
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 1.3e-22 110.9 62 75.8
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 3.6e-17 92.8 152 40.1
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.5e-15 87.4 124 46.0
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.0e-15 87.0 45 88.9
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 1.3e-14 84.3 81 53.1
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.1e-13 81.3 52 67.3
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 1.3e-11 74.3 64 56.2
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 5.3e-08 62.4 82 47.6
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 9.0e-08 61.6 51 60.8
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 9.9e-07 58.2 26 96.2


User provided reference genes

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