Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3303 Capsella rubella HOM05D007776 ORTHO05D009812 7.2e-63 243.8 129 100.0
AL1G50270 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 7.9e-54 213.8 130 88.5
AT1G35430 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 2.6e-52 208.8 129 88.4
CARHR034200 Cardamine hirsuta HOM05D007776 ORTHO05D009812 2.1e-46 189.1 129 79.8
Sp1g30150 Schrenkiella parvula HOM05D007776 ORTHO05D009812 3.6e-46 188.3 127 76.4
BraA09t38716Z Brassica rapa HOM05D007776 ORTHO05D009812 7.5e-44 180.6 114 80.7
Aa31LG6G8730 Aethionema arabicum HOM05D007776 ORTHO05D009812 1.7e-43 179.5 136 71.3
BcaC08g43737 Brassica carinata HOM05D007776 ORTHO05D009812 2.2e-43 179.1 114 79.8
A09p31800 Brassica napus HOM05D007776 ORTHO05D009812 2.2e-43 179.1 114 80.7
C06p11140 Brassica napus HOM05D007776 ORTHO05D009812 2.2e-43 179.1 114 79.8
BolC6t36249H Brassica oleracea HOM05D007776 ORTHO05D009812 2.2e-43 179.1 114 79.8
Thhalv10001838m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 3.8e-40 168.3 128 71.9
THA.LOC104806792 Tarenaya hassleriana HOM05D007776 ORTHO05D009812 2.0e-33 146.0 139 60.4
Thhalv10029064m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 2.5e-31 139.0 136 59.6
CARHR260240 Cardamine hirsuta HOM05D007776 ORTHO05D009812 2.8e-27 125.6 132 57.6
Sp6g08370 Schrenkiella parvula HOM05D007776 ORTHO05D009812 9.2e-26 120.6 135 53.3
FAN08G2421 Fragaria x ananassa HOM05D007776 ORTHO05D009812 5.9e-25 117.9 125 56.8
BcaB01g02801 Brassica carinata HOM05D007776 ORTHO05D009812 7.8e-25 117.5 133 52.6
BcaC01g04727 Brassica carinata HOM05D007776 ORTHO05D009812 7.8e-25 117.5 136 55.9
CANSAT25G0596 Cannabis sativa HOM05D007776 ORTHO05D009812 7.8e-25 117.5 113 55.8
Manes.02G198100 Manihot esculenta HOM05D007776 ORTHO05D009812 2.3e-24 115.9 131 52.7
CiPaw.07G236300 Carya illinoinensis HOM05D007776 ORTHO05D009812 5.0e-24 114.8 105 55.2
FvH4_5g31870 Fragaria vesca HOM05D007776 ORTHO05D009812 5.0e-24 114.8 128 55.5
FAN18G1270 Fragaria x ananassa HOM05D007776 ORTHO05D009812 5.0e-24 114.8 128 55.5
CiPaw.05G123100 Carya illinoinensis HOM05D007776 ORTHO05D009812 6.6e-24 114.4 105 54.3
C03p34420 Brassica napus HOM05D007776 ORTHO05D009812 8.6e-24 114.0 136 55.1
BolC3t15751H Brassica oleracea HOM05D007776 ORTHO05D009812 8.6e-24 114.0 136 55.1
AL6G42920 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 1.5e-23 113.2 135 56.3
FAN04G1877 Fragaria x ananassa HOM05D007776 ORTHO05D009812 1.5e-23 113.2 106 60.4
RcHm_v2.0_Chr7g0227891 Rosa chinensis HOM05D007776 ORTHO05D009812 1.5e-23 113.2 125 52.8
A03p28480 Brassica napus HOM05D007776 ORTHO05D009812 4.3e-23 111.7 134 54.5
Prupe.1G555000 Prunus persica HOM05D007776 ORTHO05D009812 4.3e-23 111.7 105 56.2
FAN04G0521 Fragaria x ananassa HOM05D007776 ORTHO05D009812 5.6e-23 111.3 107 58.9
BraA03t12053Z Brassica rapa HOM05D007776 ORTHO05D009812 1.2e-22 110.2 134 53.7
Gohir.D05G288000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 3.6e-22 108.6 131 52.7
Gorai.009G303100 Gossypium raimondii HOM05D007776 ORTHO05D009812 3.6e-22 108.6 131 52.7
TWI59G0674 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 3.6e-22 108.6 105 59.0
Potri.013G107300 Populus trichocarpa HOM05D007776 ORTHO05D009812 4.7e-22 108.2 134 50.0
TWI14G0313 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 1.4e-21 106.7 125 56.8
Ciclev10002690m.g Citrus clementina HOM05D007776 ORTHO05D009812 2.3e-21 105.9 124 50.8
MD15G1406800 Malus domestica HOM05D007776 ORTHO05D009812 8.9e-21 104.0 112 51.8
Sed0008767 Sechium edule HOM05D007776 ORTHO05D009812 1.2e-20 103.6 108 52.8
Sabra13G0092600 Salix brachista HOM05D007776 ORTHO05D009812 2.0e-20 102.8 130 50.0
Sabra19G0091100 Salix brachista HOM05D007776 ORTHO05D009812 2.6e-20 102.4 126 53.2
Gohir.A05G287000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 7.5e-20 100.9 130 50.0
Ca_14480_v3 Cicer arietinum L. HOM05D007776 ORTHO05D009812 4.9e-19 98.2 106 52.8
AT4G09170 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 6.4e-19 97.8 135 48.9
Duzib177G0943 Durio zibethinus HOM05D007776 ORTHO05D009812 1.1e-18 97.1 125 48.0
Potri.019G079800 Populus trichocarpa HOM05D007776 ORTHO05D009812 1.1e-18 97.1 132 50.8
Medtr0045s0130 Medicago truncatula HOM05D007776 ORTHO05D009812 1.4e-18 96.7 105 53.3
Psat5g210040 Pisum sativum HOM05D007776 ORTHO05D009812 1.4e-18 96.7 123 44.7
VMungo1080G1686 Vigna mungo HOM05D007776 ORTHO05D009812 7.0e-18 94.4 103 49.5
Cfa012949 Carpinus fangiana HOM05D007776 ORTHO05D009812 9.2e-18 94.0 106 49.1
Haze_21304 Corylus avellana HOM05D007776 ORTHO05D009812 1.6e-17 93.2 106 49.1
Nn5g27525 Nelumbo nucifera HOM05D007776 ORTHO05D009812 5.9e-17 91.3 129 44.2
Lj3g0020626 Lotus japonicus HOM05D007776 ORTHO05D009812 1.0e-16 90.5 101 55.4
Duzib116G0238 Durio zibethinus HOM05D007776 ORTHO05D009812 3.9e-16 88.6 130 46.2
Lalb_Chr25g0282901 Lupinus albus HOM05D007776 ORTHO05D009812 6.6e-16 87.8 105 48.6
PGR042G2621 Punica granatum HOM05D007776 ORTHO05D009812 8.6e-16 87.4 111 49.5
Thecc.08G190700 Theobroma cacao HOM05D007776 ORTHO05D009812 8.6e-16 87.4 134 45.5
Dinv41753 Davidia involucrata HOM05D000238 ORTHO05D002999 1.1e-15 87.0 114 47.4
TPR.G27845 Trifolium pratense HOM05D000479 ORTHO05D009812 7.3e-15 84.3 106 46.2
Cpa.g.sc507.3 Carica papaya HOM05D007776 ORTHO05D009812 9.5e-15 84.0 116 47.4
Phvul.005G023800 Phaseolus vulgaris HOM05D007776 ORTHO05D009812 1.2e-14 83.6 103 45.6
ClCG11G008540 Citrullus lanatus HOM05D007776 ORTHO05D009812 4.7e-14 81.6 111 46.8
Glyma.10G090400 Glycine max HOM05D007776 ORTHO05D009812 3.1e-13 79.0 104 46.2
QL02p026198 Quercus lobata HOM05D007776 ORTHO05D009812 3.1e-13 79.0 105 41.9
PGSC0003DMG400006837 Solanum tuberosum HOM05D007776 ORTHO05D009812 6.8e-13 77.8 114 46.5
Glyma.15G276200 Glycine max HOM05D007776 ORTHO05D009812 8.9e-13 77.4 83 53.0
Ah.05g178510 Amaranthus hybridus HOM05D007776 ORTHO05D009812 5.8e-12 74.7 135 43.0
TAR628G0395 Trochodendron aralioides HOM05D007776 ORTHO05D009812 3.7e-11 72.0 121 39.7
Solyc01g087860.2 Solanum lycopersicum HOM05D007776 ORTHO05D009812 6.4e-11 71.2 115 43.5
Sopen01g034790 Solanum pennellii HOM05D007776 ORTHO05D009812 6.4e-11 71.2 112 44.6
CSS0049282 Camellia sinensis var. sinensis HOM05D007776 ORTHO05D009812 5.4e-10 68.2 109 41.3
Rhsim12G0006900 Rhododendron simsii HOM05D007776 ORTHO05D009812 7.0e-10 67.8 98 46.9
Migut.C01313 Erythranthe guttata HOM05D007776 ORTHO05D009812 1.6e-09 66.6 112 41.1
MD08G1218400 Malus domestica HOM05D007776 ORTHO05D009812 2.0e-09 66.2 82 48.8
EL10Ac1g00128 Beta vulgaris HOM05D007776 ORTHO05D009812 1.0e-08 63.9 123 40.7
unitig_46.g17995 Utricularia gibba HOM05D007776 ORTHO05D009812 1.7e-08 63.2 94 38.3
COL.COLO4_25869 Corchorus olitorius HOM05D007776 ORTHO05D009812 8.6e-08 60.8 91 44.0
Cc10_g10000 Coffea canephora HOM05D007776 ORTHO05D009812 2.8e-06 55.8 93 38.7
unitig_747.g21557 Utricularia gibba HOM05D007776 ORTHO05D009812 6.2e-06 54.7 90 40.0


User provided reference genes

Program Settings