Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3223 Capsella rubella HOM05D007084 ORTHO05D008776 6.2e-50 200.7 114 100.0
Carub.0006s3278 Capsella rubella HOM05D007084 ORTHO05D008776 9.5e-35 150.2 113 72.6
AL6G48360 Arabidopsis lyrata HOM05D007084 ORTHO05D008776 3.6e-34 148.3 113 71.7
AT4G04870 Arabidopsis thaliana HOM05D007084 ORTHO05D008776 3.6e-34 148.3 113 71.7
CARHR252700 Cardamine hirsuta HOM05D007084 ORTHO05D008776 2.3e-33 145.6 113 70.8
Sp6g04110 Schrenkiella parvula HOM05D007084 ORTHO05D008776 8.9e-33 143.7 113 69.0
Thhalv10028782m.g Eutrema salsugineum HOM05D007084 ORTHO05D008776 2.6e-32 142.1 113 68.1
BcaC04g21332 Brassica carinata HOM05D007084 ORTHO05D008776 3.4e-32 141.7 113 68.1
C09p33070 Brassica napus HOM05D007084 ORTHO05D008776 3.4e-32 141.7 113 68.1
BcaB01g01841 Brassica carinata HOM05D007084 ORTHO05D008776 4.4e-32 141.4 113 67.3
A09p26060 Brassica napus HOM05D007084 ORTHO05D008776 4.4e-32 141.4 113 68.1
BraA09t38173Z Brassica rapa HOM05D007084 ORTHO05D008776 4.4e-32 141.4 113 68.1
Aa31LG9G9630 Aethionema arabicum HOM05D007084 ORTHO05D008776 5.8e-32 141.0 113 67.3
BolC9t56141H Brassica oleracea HOM05D007084 ORTHO05D008776 7.6e-32 140.6 113 67.3
THA.LOC104812962 Tarenaya hassleriana HOM05D007084 ORTHO05D008776 2.4e-30 135.6 113 62.8
RcHm_v2.0_Chr5g0003681 Rosa chinensis HOM05D007084 ORTHO05D008776 1.2e-29 133.3 113 64.6
FvH4_3g02430 Fragaria vesca HOM05D007084 ORTHO05D008776 6.0e-29 131.0 113 63.7
Actinidia05525 Actinidia chinensis HOM05D007084 ORTHO05D008776 8.6e-28 127.1 113 61.1
GSVIVG01012658001 Vitis vinifera HOM05D007084 ORTHO05D008776 8.6e-28 127.1 113 61.1
Lj1A1228T73 Lonicera japonica HOM05D007084 ORTHO05D008776 1.5e-27 126.3 113 59.3
Prupe.4G023700 Prunus persica HOM05D007084 ORTHO05D008776 1.9e-27 125.9 113 58.4
Thecc.06G217700 Theobroma cacao HOM05D007084 ORTHO05D008776 2.5e-27 125.6 113 60.2
MD05G1343100 Malus domestica HOM05D007084 ORTHO05D008776 3.3e-27 125.2 113 59.3
CSS0017809 Camellia sinensis var. sinensis HOM05D007084 ORTHO05D008776 9.6e-27 123.6 113 59.3
Cfa000247 Carpinus fangiana HOM05D007084 ORTHO05D008776 9.6e-27 123.6 113 61.1
CiPaw.09G089600 Carya illinoinensis HOM05D007084 ORTHO05D008776 1.2e-26 123.2 113 59.3
AUR62012678 Chenopodium quinoa HOM05D007084 ORTHO05D008776 1.2e-26 123.2 113 58.4
DCAR_028171 Daucus carota HOM05D007084 ORTHO05D008776 1.2e-26 123.2 113 59.3
TAR624G0375 Trochodendron aralioides HOM05D007084 ORTHO05D008776 1.2e-26 123.2 113 58.4
Hma1.2p1_0091F.1_g046270 Hydrangea macrophylla HOM05D007084 ORTHO05D008776 1.6e-26 122.9 113 58.4
EL10Ac8g20023 Beta vulgaris HOM05D007084 ORTHO05D008776 2.8e-26 122.1 113 58.4
COL.COLO4_31746 Corchorus olitorius HOM05D007084 ORTHO05D008776 2.8e-26 122.1 113 58.4
TPR.G7634 Trifolium pratense HOM05D007084 ORTHO05D008776 2.8e-26 122.1 113 60.2
Ciclev10015907m.g Citrus clementina HOM05D007084 ORTHO05D008776 3.6e-26 121.7 113 59.3
Gorai.010G179400 Gossypium raimondii HOM05D007084 ORTHO05D008776 3.6e-26 121.7 113 58.4
Medtr2g022840 Medicago truncatula HOM05D007084 ORTHO05D008776 3.6e-26 121.7 113 59.3
vmacro15815 Vaccinium macrocarpon HOM05D007084 ORTHO05D008776 3.6e-26 121.7 113 57.5
arahy.Tifrunner.gnm1.ann1.JJP1G0 Arachis hypogaea HOM05D007084 ORTHO05D008776 6.2e-26 120.9 113 60.2
arahy.Tifrunner.gnm1.ann1.YK9IP3 Arachis hypogaea HOM05D007084 ORTHO05D008776 6.2e-26 120.9 113 60.2
ClCG01G022070 Citrullus lanatus HOM05D007084 ORTHO05D008776 6.2e-26 120.9 113 60.2
CsaV3_6G049130 Cucumis sativus L. HOM05D007084 ORTHO05D008776 6.2e-26 120.9 113 60.2
Sed0006702 Sechium edule HOM05D007084 ORTHO05D008776 8.1e-26 120.6 113 60.2
Sc17g0007240 Simmondsia chinensis HOM05D007084 ORTHO05D008776 8.1e-26 120.6 113 56.6
Haze_06776 Corylus avellana HOM05D007084 ORTHO05D008776 1.4e-25 119.8 113 59.3
Gohir.A06G147600 Gossypium hirsutum HOM05D007084 ORTHO05D008776 1.8e-25 119.4 113 58.4
Ca_00622_v3 Cicer arietinum L. HOM05D007084 ORTHO05D008776 2.4e-25 119.0 113 58.4
Duzib160G0109 Durio zibethinus HOM05D007084 ORTHO05D008776 2.4e-25 119.0 113 56.6
Aqoxy2G01542 Aquilegia oxysepala HOM05D007084 ORTHO05D008776 3.1e-25 118.6 113 57.5
CANSAT56G0381 Cannabis sativa HOM05D007084 ORTHO05D008776 3.1e-25 118.6 113 58.4
AUR62021978 Chenopodium quinoa HOM05D007084 ORTHO05D008776 3.1e-25 118.6 113 55.8
VMungo1215G0304 Vigna mungo HOM05D007084 ORTHO05D008776 3.1e-25 118.6 113 58.4
Lalb_Chr12g0196111 Lupinus albus HOM05D007084 ORTHO05D008776 4.0e-25 118.2 113 57.5
Migut.M01299 Erythranthe guttata HOM05D007084 ORTHO05D008776 5.2e-25 117.9 113 57.5
Psat1g181960 Pisum sativum HOM05D007084 ORTHO05D008776 5.2e-25 117.9 112 58.0
QL05p074023 Quercus lobata HOM05D007084 ORTHO05D008776 5.2e-25 117.9 113 59.3
CAN.G105.15 Capsicum annuum HOM05D007084 ORTHO05D008776 6.9e-25 117.5 113 58.4
Glyma.07G259200 Glycine max HOM05D007084 ORTHO05D008776 6.9e-25 117.5 113 57.5
SGA_v2.0_scaffold7G03869 Striga asiatica HOM05D007084 ORTHO05D008776 6.9e-25 117.5 113 58.4
Nn1g07109 Nelumbo nucifera HOM05D007084 ORTHO05D008776 8.9e-25 117.1 113 56.6
Atru.chr10.2184 Acer truncatum HOM05D007084 ORTHO05D008776 1.2e-24 116.7 113 58.4
Manes.17G037300 Manihot esculenta HOM05D007084 ORTHO05D008776 1.2e-24 116.7 113 57.5
Os01g0789100 Oryza sativa ssp. japonica HOM05D007084 ORTHO05D008776 1.2e-24 116.7 113 57.5
Rhsim02G0110300 Rhododendron simsii HOM05D007084 ORTHO05D008776 1.2e-24 116.7 113 57.5
Dinv20035 Davidia involucrata HOM05D007084 ORTHO05D008776 2.0e-24 115.9 113 55.8
Potri.004G018300 Populus trichocarpa HOM05D007084 ORTHO05D008776 2.0e-24 115.9 113 58.4
Phvul.003G077300 Phaseolus vulgaris HOM05D007084 ORTHO05D008776 3.4e-24 115.2 113 57.5
SalBow5G2840 Salvia bowleyana HOM05D007084 ORTHO05D008776 3.4e-24 115.2 113 56.6
Cc09_g01900 Coffea canephora HOM05D007084 ORTHO05D008776 4.4e-24 114.8 113 56.6
MD10G1318100 Malus domestica HOM05D007084 ORTHO05D008776 5.8e-24 114.4 113 56.6
Sabra04G0010200 Salix brachista HOM05D007084 ORTHO05D008776 5.8e-24 114.4 113 58.4
Sopen10g001280 Solanum pennellii HOM05D007084 ORTHO05D008776 7.6e-24 114.0 113 57.5
PGSC0003DMG400011258 Solanum tuberosum HOM05D007084 ORTHO05D008776 9.9e-24 113.6 113 57.5
Zm00001eb151100 Zea mays HOM05D007084 ORTHO05D008776 9.9e-24 113.6 113 56.6
Peaxi162Scf00203g00128 Petunia axillaris HOM05D007084 ORTHO05D008776 1.3e-23 113.2 113 56.6
HPP92_017602 Vanilla planifolia HOM05D007084 ORTHO05D008776 1.3e-23 113.2 113 54.9
Lj6g0011030 Lotus japonicus HOM05D007084 ORTHO05D008776 1.7e-23 112.8 113 55.8
HanXRQChr01g0004301 Helianthus annuus HOM05D007084 ORTHO05D008776 2.2e-23 112.5 113 56.6
Nitab4.5_0002155g0080 Nicotiana tabacum HOM05D007084 ORTHO05D008776 3.8e-23 111.7 113 56.6
Nitab4.5_0007448g0030 Nicotiana tabacum HOM05D007084 ORTHO05D008776 3.8e-23 111.7 113 56.6
Solyc10g005290.4 Solanum lycopersicum HOM05D007084 ORTHO05D008776 3.8e-23 111.7 112 57.1
Lsat_1_v5_gn_1_124280 Lactuca sativa HOM05D007084 ORTHO05D008776 6.4e-23 110.9 113 55.8
TWI38G0963 Tripterygium wilfordii HOM05D007084 ORTHO05D008776 1.9e-22 109.4 113 51.3
CDE11G1072 Ceratophyllum demersum HOM05D007084 ORTHO05D008776 2.4e-22 109.0 113 50.4
Eucgr.D01306 Eucalyptus grandis HOM05D007084 ORTHO05D008776 3.2e-22 108.6 111 55.0
PSO832G2811 Papaver somniferum HOM05D007084 ORTHO05D008776 4.2e-22 108.2 113 54.0
Dinv13874 Davidia involucrata HOM05D007084 ORTHO05D008776 7.1e-22 107.5 139 46.8
PSO210G7580 Papaver somniferum HOM05D007084 ORTHO05D008776 9.3e-22 107.1 113 53.1
ECA248G3788 Erigeron canadensis HOM05D007084 ORTHO05D008776 1.6e-21 106.3 113 54.9
ATR0752G074 Amborella trichopoda HOM05D007084 ORTHO05D008776 2.7e-21 105.5 113 50.4
PSO591G0421 Papaver somniferum HOM05D007084 ORTHO05D008776 5.1e-20 101.3 113 52.2
Gohir.D06G153400 Gossypium hirsutum HOM05D007084 ORTHO05D008776 5.3e-17 91.3 113 48.7
Mapoly0072s0085 Marchantia polymorpha HOM05D007084 ORTHO05D008776 1.5e-16 89.7 113 45.1
CBR_g8026 Chara braunii HOM05D007084 ORTHO05D008776 1.9e-14 82.8 109 43.1
SalBow5G4783 Salvia bowleyana HOM05D007084 ORTHO05D008776 7.1e-14 80.9 54 68.5
Pp3c12_14310 Physcomitrium patens HOM05D007084 ORTHO05D008776 2.7e-13 79.0 111 40.5
unitig_748.g7583 Utricularia gibba HOM05D007084 ORTHO05D008776 1.4e-09 66.6 99 40.4
SalBow5G0122 Salvia bowleyana HOM05D007084 ORTHO05D008776 4.0e-09 65.1 113 40.7
SMO356G0510 Selaginella moellendorffii HOM05D007084 ORTHO05D008776 4.0e-09 65.1 120 38.3
MELO3C007382.2 Cucumis melo HOM05D007084 ORTHO05D008776 7.1e-06 54.3 29 93.1


User provided reference genes

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