Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 7.7e-92 340.5 176 100.0
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 3.7e-86 321.6 176 93.8
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 1.3e-78 296.6 184 84.2
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 4.8e-78 294.7 169 88.2
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 4.8e-78 294.7 169 88.2
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 8.2e-78 293.9 184 83.7
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 1.4e-77 293.1 184 83.7
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 5.3e-77 291.2 184 83.2
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.9e-74 282.7 163 86.5
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 6.8e-72 274.2 178 80.3
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.0e-71 272.7 170 78.2
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.0e-71 272.7 170 78.2
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 2.6e-71 272.3 170 78.2
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 4.4e-71 271.6 170 77.6
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 4.4e-71 271.6 170 77.6
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 1.7e-70 269.6 170 77.6
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.7e-70 269.6 169 79.9
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 4.8e-70 268.1 170 77.6
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 6.3e-70 267.7 170 77.6
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 6.3e-70 267.7 170 77.1
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.8e-69 266.2 170 77.6
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.4e-69 265.8 181 76.2
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 9.1e-69 263.8 169 78.1
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 5.0e-67 258.1 161 79.5
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 8.6e-67 257.3 197 69.0
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 5.5e-66 254.6 170 75.3
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 7.2e-66 254.2 161 78.3
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 7.2e-66 254.2 166 76.5
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 4.7e-65 251.5 154 79.9
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 6.1e-65 251.1 158 78.5
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 1.8e-64 249.6 171 76.0
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 1.8e-64 249.6 169 72.8
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 4.0e-64 248.4 198 66.7
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 4.0e-64 248.4 169 74.0
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 4.0e-64 248.4 167 74.9
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 5.2e-64 248.1 166 74.1
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 5.2e-64 248.1 169 72.8
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.2e-63 246.9 169 72.8
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 1.5e-63 246.5 151 81.5
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 1.5e-63 246.5 169 72.8
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 2.6e-63 245.7 163 75.5
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 3.4e-63 245.4 169 72.8
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 4.4e-63 245.0 169 72.2
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 9.8e-63 243.8 150 81.3
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 9.8e-63 243.8 157 76.4
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 9.8e-63 243.8 172 72.7
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 1.7e-62 243.0 159 77.4
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 2.2e-62 242.7 159 75.5
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.8e-62 242.3 170 72.9
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.9e-62 241.5 155 76.8
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.9e-62 241.5 155 76.8
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 4.9e-62 241.5 155 76.8
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 6.3e-62 241.1 164 73.8
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 8.3e-62 240.7 151 78.1
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.1e-61 240.4 130 93.1
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.4e-61 240.0 160 73.8
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.4e-61 240.0 159 74.2
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 1.8e-61 239.6 170 68.8
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 2.4e-61 239.2 160 73.8
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 2.4e-61 239.2 177 68.9
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 2.4e-61 239.2 166 71.1
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.1e-61 238.8 130 93.8
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 3.1e-61 238.8 159 73.0
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 3.1e-61 238.8 163 74.2
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 5.4e-61 238.0 145 80.0
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 7.0e-61 237.7 151 78.8
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 7.0e-61 237.7 167 69.5
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 9.2e-61 237.3 171 70.2
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 9.2e-61 237.3 160 71.2
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 9.2e-61 237.3 184 66.8
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 1.6e-60 236.5 152 76.3
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.6e-60 236.5 167 71.3
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.6e-60 236.5 159 72.3
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.6e-60 236.5 161 75.8
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 2.0e-60 236.1 155 74.2
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.0e-60 236.1 168 70.2
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 2.0e-60 236.1 162 72.8
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 2.7e-60 235.7 161 71.4
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 2.7e-60 235.7 187 66.3
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.7e-60 235.7 165 71.5
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 2.7e-60 235.7 157 73.9
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.7e-60 235.7 165 71.5
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 3.5e-60 235.3 152 75.0
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 3.5e-60 235.3 167 68.3
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.5e-60 235.0 171 69.6
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 5.9e-60 234.6 152 76.3
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 5.9e-60 234.6 162 71.6
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 5.9e-60 234.6 166 70.5
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.0e-59 233.8 160 72.5
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.3e-59 233.4 164 72.0
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.3e-59 233.4 162 71.0
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 2.3e-59 232.6 153 75.8
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.3e-59 232.6 159 71.7
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 2.9e-59 232.3 130 91.5
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.8e-59 231.9 171 69.0
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 3.8e-59 231.9 160 72.5
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 6.6e-59 231.1 158 71.5
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 8.6e-59 230.7 161 68.9
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.1e-58 230.3 165 69.1
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.5e-58 229.9 149 76.5
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 3.3e-58 228.8 170 68.8
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 5.6e-58 228.0 157 72.6
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 1.2e-57 226.9 161 67.1
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 2.1e-57 226.1 158 70.3
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 2.8e-57 225.7 162 67.3
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 3.6e-57 225.3 159 71.1
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 4.7e-57 224.9 161 68.9
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.0e-56 223.8 159 70.4
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.0e-56 221.9 161 70.2
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 4.0e-56 221.9 153 69.3
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 5.2e-56 221.5 161 69.6
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 5.2e-56 221.5 161 69.6
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 6.8e-56 221.1 191 61.8
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 6.8e-56 221.1 167 63.5
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 1.5e-55 219.9 158 68.4
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.4e-55 218.8 154 71.4
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 4.4e-55 218.4 154 68.2
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 4.4e-55 218.4 162 67.3
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 5.7e-55 218.0 157 67.5
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 9.8e-55 217.2 221 54.8
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 4.9e-54 214.9 141 75.9
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 6.4e-54 214.5 161 66.5
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.8e-53 213.0 163 64.4
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 4.1e-53 211.8 144 75.0
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 5.4e-53 211.5 157 66.9
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 5.4e-53 211.5 170 61.2
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.6e-52 209.9 151 70.2
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.7e-52 209.1 167 64.7
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.0e-51 207.2 162 64.8
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 5.0e-51 204.9 150 67.3
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 5.0e-51 204.9 153 66.7
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 5.0e-51 204.9 130 79.2
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 4.3e-50 201.8 143 72.7
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 7.3e-50 201.1 129 79.1
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 3.6e-49 198.7 130 76.2
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 6.2e-49 198.0 125 78.4
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 1.2e-47 193.7 126 73.0
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 3.4e-47 192.2 131 75.6
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.0e-43 180.6 118 72.0
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.9e-42 176.4 151 54.3
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.2e-41 173.7 112 77.7
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.8e-41 172.6 155 56.1
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 1.1e-40 170.6 120 71.7
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.4e-40 170.2 121 66.9
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.8e-40 169.9 165 50.9
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 3.1e-40 169.1 143 58.7
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 5.8e-39 164.9 149 55.0
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 8.3e-38 161.0 124 63.7
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 2.4e-37 159.5 159 49.7
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 5.4e-37 158.3 120 67.5
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 4.6e-36 155.2 96 82.3
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 7.8e-36 154.5 148 50.7
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 7.3e-34 147.9 160 48.8
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.3e-30 137.1 97 67.0
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.9e-26 123.2 97 61.9
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.1e-24 117.5 102 61.8
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.4e-21 106.3 137 47.4
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 4.3e-18 95.5 86 60.5
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 4.5e-15 85.5 103 41.7
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 1.6e-09 67.0 46 63.0
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.1e-08 64.3 46 73.9
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 1.4e-08 63.9 46 73.9
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 1.4e-08 63.9 46 73.9
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 1.8e-08 63.5 44 70.5
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 9.0e-08 61.2 47 70.2


User provided reference genes

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