Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3106 Capsella rubella HOM05D005771 ORTHO05D007173 6.9e-171 604.0 328 100.0
AT1G32730 Arabidopsis thaliana HOM05D005771 ORTHO05D007173 6.5e-145 517.7 328 83.2
AL1G47010 Arabidopsis lyrata HOM05D005771 ORTHO05D007173 1.2e-141 506.9 325 81.8
Thhalv10008194m.g Eutrema salsugineum HOM05D005771 ORTHO05D007173 3.0e-134 482.3 328 79.3
CARHR032110 Cardamine hirsuta HOM05D005771 ORTHO05D007173 2.5e-128 462.6 326 76.4
C05p32200 Brassica napus HOM05D005771 ORTHO05D007173 3.2e-123 445.7 338 73.1
BolC5t31952H Brassica oleracea HOM05D005771 ORTHO05D007173 3.2e-123 445.7 338 73.1
Sp1g28240 Schrenkiella parvula HOM05D005771 ORTHO05D007173 6.6e-121 438.0 329 72.9
Aa31LG2G13250 Aethionema arabicum HOM05D005771 ORTHO05D007173 2.4e-115 419.5 339 69.6
BcaC05g27301 Brassica carinata HOM05D005771 ORTHO05D007173 8.1e-111 404.4 350 66.9
BcaC05g27831 Brassica carinata HOM05D005771 ORTHO05D007173 1.3e-105 387.1 319 68.7
C05p38290 Brassica napus HOM05D005771 ORTHO05D007173 1.3e-105 387.1 319 68.7
BolC5t32561H Brassica oleracea HOM05D005771 ORTHO05D007173 1.3e-105 387.1 319 68.7
A05p24640 Brassica napus HOM05D005771 ORTHO05D007173 2.2e-100 369.8 324 65.4
BraA05t21350Z Brassica rapa HOM05D005771 ORTHO05D007173 2.2e-100 369.8 324 65.4
THA.LOC104812740 Tarenaya hassleriana HOM05D005771 ORTHO05D007173 3.5e-98 362.5 321 63.6
THA.LOC104807943 Tarenaya hassleriana HOM05D005771 ORTHO05D007173 1.6e-87 327.0 337 58.8
Cfa012362 Carpinus fangiana HOM05D005771 ORTHO05D007173 2.7e-74 283.1 309 51.8
MD06G1043400 Malus domestica HOM05D005771 ORTHO05D007173 2.7e-74 283.1 346 47.1
PGR031G0896 Punica granatum HOM05D005771 ORTHO05D007173 7.9e-74 281.6 341 49.0
Ciclev10020716m.g Citrus clementina HOM05D005771 ORTHO05D007173 1.3e-73 280.8 369 46.9
CiPaw.11G085900 Carya illinoinensis HOM05D005771 ORTHO05D007173 5.1e-73 278.9 371 46.6
Potri.003G085901 Populus trichocarpa HOM05D005771 ORTHO05D007173 4.3e-72 275.8 336 50.0
Potri.001G148500 Populus trichocarpa HOM05D005771 ORTHO05D007173 1.3e-71 274.2 333 49.2
Dinv25170 Davidia involucrata HOM05D005771 ORTHO05D007173 2.1e-71 273.5 322 50.3
Prupe.5G050200 Prunus persica HOM05D005771 ORTHO05D007173 2.1e-71 273.5 345 47.8
CANSAT21G2176 Cannabis sativa HOM05D005771 ORTHO05D007173 1.4e-70 270.8 352 45.7
Manes.15G171600 Manihot esculenta HOM05D005771 ORTHO05D007173 6.9e-70 268.5 379 46.7
Lalb_Chr16g0386311 Lupinus albus HOM05D005771 ORTHO05D007173 2.0e-69 266.9 325 49.2
Atru.chr9.1139 Acer truncatum HOM05D005771 ORTHO05D007173 3.8e-68 262.7 337 49.9
TWI81G0410 Tripterygium wilfordii HOM05D005771 ORTHO05D007173 3.8e-68 262.7 291 51.5
MD16G1267400 Malus domestica HOM05D005771 ORTHO05D007173 5.0e-68 262.3 363 43.0
Gohir.D05G283033 Gossypium hirsutum HOM05D005771 ORTHO05D007173 8.5e-68 261.5 343 46.4
Gorai.009G296800 Gossypium raimondii HOM05D005771 ORTHO05D007173 8.5e-68 261.5 343 45.8
QL12p007731 Quercus lobata HOM05D005771 ORTHO05D007173 8.5e-68 261.5 325 47.7
FvH4_5g20870 Fragaria vesca HOM05D005771 ORTHO05D007173 1.4e-67 260.8 289 51.2
Hma1.2p1_0414F.1_g147560 Hydrangea macrophylla HOM05D005771 ORTHO05D007173 1.4e-67 260.8 333 47.4
Lalb_Chr05g0220751 Lupinus albus HOM05D005771 ORTHO05D007173 1.9e-67 260.4 302 50.3
Glyma.17G150800 Glycine max HOM05D005771 ORTHO05D007173 2.5e-67 260.0 287 51.2
TWI60G1113 Tripterygium wilfordii HOM05D005771 ORTHO05D007173 3.2e-67 259.6 292 51.4
RcHm_v2.0_Chr7g0207891 Rosa chinensis HOM05D005771 ORTHO05D007173 4.2e-67 259.2 346 45.4
Glyma.05G068200 Glycine max HOM05D005771 ORTHO05D007173 7.2e-67 258.5 288 50.7
CiPaw.12G058800 Carya illinoinensis HOM05D005771 ORTHO05D007173 1.6e-66 257.3 359 45.1
Gohir.A05G281200 Gossypium hirsutum HOM05D005771 ORTHO05D007173 4.6e-66 255.8 343 46.1
TAR629G1255 Trochodendron aralioides HOM05D005771 ORTHO05D007173 7.9e-66 255.0 322 47.8
Eucgr.D02148 Eucalyptus grandis HOM05D005771 ORTHO05D007173 1.3e-65 254.2 276 52.2
arahy.Tifrunner.gnm1.ann1.2CCA8K Arachis hypogaea HOM05D005771 ORTHO05D007173 1.8e-65 253.8 294 49.0
arahy.Tifrunner.gnm1.ann1.X1SA4Y Arachis hypogaea HOM05D005771 ORTHO05D007173 1.8e-65 253.8 294 49.0
Haze_08321 Corylus avellana HOM05D005771 ORTHO05D007173 3.0e-65 253.1 367 43.3
FAN08G3334 Fragaria x ananassa HOM05D005771 ORTHO05D007173 3.0e-65 253.1 356 43.5
Phvul.003G227100 Phaseolus vulgaris HOM05D005771 ORTHO05D007173 3.0e-65 253.1 282 51.1
Cc08_g01580 Coffea canephora HOM05D005771 ORTHO05D007173 5.1e-65 252.3 336 47.0
FAN18G3681 Fragaria x ananassa HOM05D005771 ORTHO05D007173 5.1e-65 252.3 299 49.5
Thecc.10G165100 Theobroma cacao HOM05D005771 ORTHO05D007173 5.1e-65 252.3 275 53.5
ClCG10G001970 Citrullus lanatus HOM05D005771 ORTHO05D007173 1.1e-64 251.1 340 44.7
Nn6g33714 Nelumbo nucifera HOM05D005771 ORTHO05D007173 2.5e-64 250.0 351 44.4
Ca_22032_v3 Cicer arietinum L. HOM05D005771 ORTHO05D007173 7.4e-64 248.4 289 50.5
FAN04G1778 Fragaria x ananassa HOM05D005771 ORTHO05D007173 7.4e-64 248.4 356 43.0
COL.COLO4_05118 Corchorus olitorius HOM05D005771 ORTHO05D007173 2.8e-63 246.5 341 45.2
Nitab4.5_0001444g0090 Nicotiana tabacum HOM05D005771 ORTHO05D007173 2.8e-63 246.5 288 49.3
Medtr4g099070 Medicago truncatula HOM05D005771 ORTHO05D007173 1.1e-62 244.6 281 51.2
Actinidia31481 Actinidia chinensis HOM05D005771 ORTHO05D007173 1.8e-62 243.8 268 50.4
Lj2g0023107 Lotus japonicus HOM05D005771 ORTHO05D007173 3.1e-62 243.0 272 50.4
Sc01g0007800 Simmondsia chinensis HOM05D005771 ORTHO05D007173 4.1e-62 242.7 366 41.8
Lj4g0020972 Lotus japonicus HOM05D005771 ORTHO05D007173 5.3e-62 242.3 294 49.0
Sed0018056 Sechium edule HOM05D005771 ORTHO05D007173 5.3e-62 242.3 326 45.4
Oeu006260.1 Olea europaea HOM05D005771 ORTHO05D007173 6.9e-62 241.9 315 46.0
DCAR_000726 Daucus carota HOM05D005771 ORTHO05D007173 1.5e-61 240.7 319 44.8
Sopen08g026040 Solanum pennellii HOM05D005771 ORTHO05D007173 2.6e-61 240.0 309 46.3
Duzib106G1532 Durio zibethinus HOM05D005771 ORTHO05D007173 3.4e-61 239.6 291 49.1
Solyc08g077450.4 Solanum lycopersicum HOM05D005771 ORTHO05D007173 3.4e-61 239.6 308 46.8
Hund11296 Selenicereus undatus HOM05D005771 ORTHO05D007173 1.0e-60 238.0 284 47.5
Actinidia10872 Actinidia chinensis HOM05D005771 ORTHO05D007173 1.7e-60 237.3 345 43.8
Nitab4.5_0001708g0070 Nicotiana tabacum HOM05D005771 ORTHO05D007173 2.2e-60 236.9 335 47.8
CsaV3_3G002100 Cucumis sativus L. HOM05D005771 ORTHO05D007173 2.5e-59 233.4 346 43.1
Gohir.A10G183200 Gossypium hirsutum HOM05D005771 ORTHO05D007173 7.2e-59 231.9 275 50.5
TPR.G11182 Trifolium pratense HOM05D005771 ORTHO05D007173 1.6e-58 230.7 328 45.1
CSS0003087 Camellia sinensis var. sinensis HOM05D005771 ORTHO05D007173 2.1e-58 230.3 345 42.6
Gorai.011G213100 Gossypium raimondii HOM05D005771 ORTHO05D007173 2.7e-58 229.9 275 49.8
Gohir.D10G190000 Gossypium hirsutum HOM05D005771 ORTHO05D007173 2.3e-57 226.9 275 49.5
Migut.E00856 Erythranthe guttata HOM05D005771 ORTHO05D007173 3.0e-57 226.5 327 42.2
Migut.E00807 Erythranthe guttata HOM05D005771 ORTHO05D007173 3.9e-57 226.1 327 42.8
Aqoxy3G02583 Aquilegia oxysepala HOM05D005771 ORTHO05D007173 1.1e-56 224.6 293 47.1
DCAR_000728 Daucus carota HOM05D005771 ORTHO05D007173 4.4e-56 222.6 325 42.8
HanXRQChr12g0368601 Helianthus annuus HOM05D005771 ORTHO05D007173 1.4e-54 217.6 298 46.3
ECA233G5206 Erigeron canadensis HOM05D005771 ORTHO05D007173 1.8e-54 217.2 373 39.4
MSTRG.1962 Avicennia marina HOM05D005771 ORTHO05D007173 3.1e-54 216.5 357 38.9
MELO3C013882.2 Cucumis melo HOM05D005771 ORTHO05D007173 9.1e-54 214.9 370 39.2
PSO063G1478 Papaver somniferum HOM05D005771 ORTHO05D007173 1.2e-53 214.5 339 43.4
GSVIVG01013265001 Vitis vinifera HOM05D005771 ORTHO05D007173 2.0e-53 213.8 162 64.8
PSO782G3090 Papaver somniferum HOM05D005771 ORTHO05D007173 1.7e-52 210.7 278 49.3
Sabra03G0055800 Salix brachista HOM05D005771 ORTHO05D007173 2.2e-52 210.3 377 41.6
SGA_v2.0_scaffold20G09242 Striga asiatica HOM05D005771 ORTHO05D007173 2.1e-50 203.8 329 42.9
HPP92_007338 Vanilla planifolia HOM05D005771 ORTHO05D007173 1.4e-49 201.1 319 42.3
Lsat_1_v5_gn_6_67960 Lactuca sativa HOM05D005771 ORTHO05D007173 8.8e-49 198.4 318 40.6
Rhsim07G0120600 Rhododendron simsii HOM05D005771 ORTHO05D007173 1.1e-48 198.0 376 39.1
CDE02G0742 Ceratophyllum demersum HOM05D005771 ORTHO05D007173 3.7e-47 193.0 295 41.4
CDE11G1022 Ceratophyllum demersum HOM05D005771 ORTHO05D007173 1.2e-45 188.0 307 39.7
ATR0829G207 Amborella trichopoda HOM05D005771 ORTHO05D007173 1.7e-44 184.1 310 39.4
EL10Ac5g12212 Beta vulgaris HOM05D005771 ORTHO05D007173 6.5e-44 182.2 270 44.1
Cpa.g.sc2.371 Carica papaya HOM05D005771 ORTHO05D007173 1.5e-43 181.0 300 38.7
Peaxi162Scf00084g00314 Petunia axillaris HOM05D005771 ORTHO05D007173 1.6e-42 177.6 266 41.4
VMungo0251G2395 Vigna mungo HOM05D005771 ORTHO05D007173 2.1e-42 177.2 226 49.1
Os08g0129500 Oryza sativa ssp. japonica HOM05D005771 ORTHO05D007173 1.8e-41 174.1 329 37.4
Sabra01G0116900 Salix brachista HOM05D005771 ORTHO05D007173 3.3e-40 169.9 259 42.5
Psat4g077240 Pisum sativum HOM05D005771 ORTHO05D007173 3.7e-39 166.4 190 50.5
unitig_21.g20376 Utricularia gibba HOM05D005771 ORTHO05D007173 6.3e-39 165.6 393 35.9
Zm00001eb261700 Zea mays HOM05D005771 ORTHO05D007173 4.1e-38 162.9 292 36.0
vmacro14112 Vaccinium macrocarpon HOM05D005771 ORTHO05D007173 3.5e-37 159.8 225 44.9
Oeu039354.1 Olea europaea HOM05D005771 ORTHO05D007173 6.1e-34 149.1 252 39.7
AUR62018795 Chenopodium quinoa HOM05D005771 ORTHO05D007173 2.3e-33 147.1 303 36.6
FAN13G3323 Fragaria x ananassa HOM05D005771 ORTHO05D007173 2.3e-33 147.1 345 32.8
AUR62007206 Chenopodium quinoa HOM05D005771 ORTHO05D007173 1.5e-32 144.4 275 39.3
Sabra01G0118400 Salix brachista HOM05D005771 ORTHO05D007173 2.2e-31 140.6 256 42.6
Ah.07g199650 Amaranthus hybridus HOM05D005771 ORTHO05D007173 1.9e-27 127.5 416 29.8
TPR.G12459 Trifolium pratense HOM05D005771 ORTHO05D007173 4.1e-22 109.8 170 42.9
SEGI_22059 Sequoiadendron giganteum HOM05D005771 ORTHO05D000001 4.0e-17 93.2 191 35.6
Psat4g077280 Pisum sativum HOM05D005771 ORTHO05D007173 1.2e-16 91.7 72 59.7
SEGI_34267 Sequoiadendron giganteum HOM05D005771 ORTHO05D007173 5.9e-13 79.3 67 61.2
arahy.Tifrunner.gnm1.ann1.ARXY04 Arachis hypogaea HOM05D005771 ORTHO05D007173 1.7e-12 77.8 66 62.1
Mapoly0082s0082 Marchantia polymorpha HOM05D005771 ORTHO05D007173 1.7e-12 77.8 364 26.4
Pp3c2_10410 Physcomitrium patens HOM05D005771 ORTHO05D007173 5.0e-12 76.3 344 24.7
AagrBONN_evm.TU.Sc2ySwM_117.836 Anthoceros agrestis HOM05D005771 ORTHO05D007173 9.5e-11 72.0 274 26.6
TAR636G0006 Trochodendron aralioides HOM05D005771 ORTHO05D007173 4.7e-10 69.7 49 65.3
Zm00001eb173270 Zea mays HOM05D005771 ORTHO05D007173 4.4e-08 63.2 154 30.5
Cpa.g.sc2.370 Carica papaya HOM05D005771 ORTHO05D007173 4.1e-06 56.6 53 60.4
SMO347G0210 Selaginella moellendorffii HOM05D005771 ORTHO05D007173 4.1e-06 56.6 410 22.2


User provided reference genes

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