Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.6e-99 365.5 204 100.0
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.7e-79 299.7 208 78.4
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 4.7e-77 291.6 206 77.2
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 4.7e-77 291.6 209 75.1
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.9e-74 282.3 208 76.9
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.1e-70 270.4 209 68.9
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.4e-65 253.4 209 70.8
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.9e-62 243.0 209 65.1
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.9e-62 243.0 209 65.1
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 2.5e-62 242.7 209 65.1
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 2.1e-61 239.6 204 67.6
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 2.1e-61 239.6 204 67.6
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 2.1e-61 239.6 204 67.6
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 9.0e-60 234.2 213 72.8
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.3e-58 230.3 209 64.1
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.3e-58 230.3 209 64.1
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 5.3e-52 208.4 207 58.0
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.5e-51 206.8 209 59.3
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 5.5e-49 198.4 210 56.7
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.1e-48 196.4 208 57.2
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.7e-45 185.7 207 57.0
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 2.6e-43 179.5 204 53.4
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 4.2e-41 172.2 214 51.9
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 2.7e-40 169.5 208 50.5
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 3.9e-39 165.6 204 49.5
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 3.3e-38 162.5 204 48.0
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 3.3e-38 162.5 204 48.0
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 3.7e-37 159.1 205 49.3
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.1e-36 157.5 204 49.0
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 3.1e-36 156.0 216 49.1
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 3.8e-34 149.1 223 46.2
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 6.5e-34 148.3 223 45.7
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 2.1e-32 143.3 221 46.2
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.6e-32 142.1 223 46.6
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.0e-31 141.0 225 49.3
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.4e-31 140.6 230 43.5
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.5e-30 137.1 233 42.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.3e-30 135.6 223 44.4
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 4.3e-30 135.6 223 44.4
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.7e-30 134.4 227 40.1
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 4.8e-29 132.1 223 43.0
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 6.3e-29 131.7 216 44.9
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 3.1e-28 129.4 223 41.7
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 5.3e-28 128.6 219 47.5
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.2e-27 127.5 220 39.5
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.4e-27 125.9 228 42.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 4.5e-27 125.6 231 43.7
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 4.5e-27 125.6 229 42.8
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 4.5e-27 125.6 231 43.3
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 7.7e-27 124.8 236 44.5
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.3e-26 124.0 229 42.4
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.3e-26 124.0 229 42.4
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.3e-26 124.0 242 42.1
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.3e-26 124.0 242 42.1
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.9e-26 122.9 234 41.9
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 5.0e-26 122.1 234 40.2
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 8.5e-26 121.3 236 40.3
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 8.5e-26 121.3 239 43.5
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 8.5e-26 121.3 236 39.8
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 8.5e-26 121.3 229 37.6
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.1e-25 120.9 248 43.1
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.4e-25 120.6 227 34.8
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.9e-25 120.2 231 42.0
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.2e-25 118.2 221 39.8
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.2e-24 117.5 227 34.4
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.2e-24 117.5 221 38.5
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 2.7e-24 116.3 232 43.1
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.6e-24 115.9 242 40.9
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 6.1e-24 115.2 249 40.6
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 6.1e-24 115.2 228 44.3
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 7.9e-24 114.8 221 34.8
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 7.9e-24 114.8 232 47.8
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 7.9e-24 114.8 197 45.2
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.8e-23 113.6 228 37.3
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 2.3e-23 113.2 238 40.3
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 3.9e-23 112.5 211 38.4
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.5e-22 110.5 245 40.4
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.3e-22 109.4 220 42.7
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.3e-22 109.4 234 41.0
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.4e-22 109.0 242 33.9
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 7.4e-22 108.2 235 35.7
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.7e-22 107.8 220 42.3
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.3e-21 107.5 242 33.5
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 2.2e-21 106.7 203 36.9
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 2.8e-21 106.3 245 33.9
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 2.8e-21 106.3 245 38.8
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.7e-21 105.9 245 33.5
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 4.8e-21 105.5 245 38.8
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 8.2e-21 104.8 223 36.8
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.8e-20 103.6 222 32.9
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 1.8e-20 103.6 231 33.3
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 4.1e-20 102.4 233 36.9
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.1e-20 102.4 214 41.1
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 5.3e-20 102.1 205 37.6
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.2e-19 100.9 218 36.2
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.2e-19 100.9 246 38.2
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.6e-19 100.5 245 33.1
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 4.5e-19 99.0 251 35.1
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.7e-18 97.1 251 35.5
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.0e-18 95.5 244 39.8
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.9e-17 93.6 244 32.8
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.2e-17 92.4 232 34.5
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.6e-16 90.5 190 36.8
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.6e-16 90.5 206 32.0
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.6e-16 90.5 235 31.5
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.6e-16 90.5 216 39.8
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.1e-16 90.1 230 34.8
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 4.7e-16 89.0 237 30.8
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 6.1e-16 88.6 225 37.3
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 6.1e-16 88.6 239 35.1
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 8.0e-16 88.2 218 31.7
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.4e-15 87.4 135 38.5
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 2.3e-15 86.7 211 32.2
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.5e-14 84.0 223 31.4
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 5.7e-14 82.0 229 33.2
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 9.7e-14 81.3 196 32.1
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 3.7e-13 79.3 237 37.1
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 3.7e-13 79.3 232 31.5
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.7e-13 79.3 213 34.7
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.8e-13 79.0 209 30.6
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 8.2e-13 78.2 203 36.0
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.1e-12 76.3 239 33.5
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 7.0e-12 75.1 229 36.7
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 9.1e-12 74.7 183 36.1
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.3e-10 70.9 205 34.6
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 6.5e-10 68.6 189 37.6
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.1e-09 67.8 206 33.0
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.9e-09 67.0 270 33.3
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.9e-09 67.0 200 28.0
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.2e-09 66.2 180 38.9
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 4.2e-09 65.9 200 30.5
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.5e-09 65.5 220 29.5
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 5.5e-09 65.5 111 37.8
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 8.0e-08 61.6 131 34.4
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.0e-07 61.2 167 35.9
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.0e-07 61.2 80 45.0
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.8e-07 60.5 264 28.4
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.8e-07 60.5 257 31.5
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 4.0e-07 59.3 98 42.9
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 6.8e-07 58.5 138 31.9
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 3.4e-06 56.2 94 36.2


User provided reference genes

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