Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 6.8e-64 247.3 135 100.0
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 2.6e-55 218.8 126 94.4
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 1.9e-53 212.6 123 94.3
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 1.0e-51 206.8 122 92.6
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 1.1e-50 203.4 120 92.5
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 5.6e-50 201.1 127 87.4
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 8.1e-49 197.2 128 86.7
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 8.1e-49 197.2 128 86.7
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 1.8e-48 196.1 126 84.9
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 2.3e-48 195.7 128 85.9
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 3.1e-48 195.3 128 85.9
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 3.1e-48 195.3 128 85.9
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 6.8e-48 194.1 120 89.2
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 2.2e-46 189.1 126 80.2
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 1.9e-45 186.0 120 81.7
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 6.0e-36 154.5 123 69.1
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 2.4e-29 132.5 126 65.9
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 3.2e-29 132.1 123 61.0
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 5.4e-29 131.3 123 61.0
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 1.6e-28 129.8 123 60.2
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 4.6e-28 128.3 112 64.3
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 6.0e-28 127.9 131 58.8
BcaC05g27873 Brassica carinata HOM05D006869 ORTHO05D008641 7.8e-28 127.5 117 71.8
C05p38760 Brassica napus HOM05D006869 ORTHO05D008641 7.8e-28 127.5 117 71.8
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 7.8e-28 127.5 117 61.5
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 1.0e-27 127.1 132 59.1
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 1.7e-27 126.3 132 56.1
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 1.7e-27 126.3 128 58.6
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 5.1e-27 124.8 127 59.1
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 6.6e-27 124.4 128 59.4
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 1.1e-26 123.6 103 67.0
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 1.1e-26 123.6 103 67.0
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 1.1e-26 123.6 119 59.7
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 1.5e-26 123.2 125 58.4
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 1.5e-26 123.2 123 57.7
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 2.5e-26 122.5 127 58.3
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 3.3e-26 122.1 105 63.8
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 5.6e-26 121.3 99 67.7
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 7.3e-26 120.9 116 59.5
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 7.3e-26 120.9 116 59.5
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 1.3e-25 120.2 104 64.4
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 2.1e-25 119.4 112 58.0
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 2.1e-25 119.4 108 63.9
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 2.1e-25 119.4 103 66.0
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 2.8e-25 119.0 127 56.7
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 2.8e-25 119.0 125 58.4
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 4.8e-25 118.2 111 64.0
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 4.8e-25 118.2 97 67.0
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 6.2e-25 117.9 116 56.9
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 6.2e-25 117.9 124 55.6
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 1.4e-24 116.7 124 54.0
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 2.4e-24 115.9 97 68.0
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 2.4e-24 115.9 119 55.5
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 3.1e-24 115.5 113 57.5
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 3.1e-24 115.5 125 54.4
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 4.0e-24 115.2 112 58.9
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 5.3e-24 114.8 110 62.7
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 6.9e-24 114.4 130 53.1
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 6.9e-24 114.4 95 68.4
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 9.0e-24 114.0 124 54.0
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 9.0e-24 114.0 111 58.6
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 1.2e-23 113.6 95 67.4
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 1.5e-23 113.2 105 61.0
BolC5t32616H Brassica oleracea HOM05D006869 ORTHO05D008641 2.0e-23 112.8 84 81.0
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.0e-23 112.8 124 55.6
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 2.6e-23 112.5 125 52.8
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 3.4e-23 112.1 135 52.6
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 3.4e-23 112.1 103 63.1
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 3.4e-23 112.1 107 59.8
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 4.5e-23 111.7 95 65.3
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 4.5e-23 111.7 116 56.0
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 7.6e-23 110.9 138 53.6
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 7.6e-23 110.9 113 54.9
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 9.9e-23 110.5 131 52.7
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 9.9e-23 110.5 99 64.6
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 2.2e-22 109.4 104 57.7
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.9e-22 109.0 131 51.9
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 3.8e-22 108.6 121 54.5
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 1.9e-21 106.3 95 62.1
HPP92_026375 Vanilla planifolia HOM05D006869 ORTHO05D008641 2.4e-21 105.9 109 56.0
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 9.3e-21 104.0 164 45.1
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 2.7e-20 102.4 159 44.7
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 1.3e-19 100.1 113 52.2
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 1.3e-19 100.1 97 58.8
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 2.3e-19 99.4 112 51.8
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 3.0e-19 99.0 124 50.0
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 1.1e-18 97.1 114 54.4
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 9.6e-18 94.0 143 45.5
Sed0006536 Sechium edule HOM05D006869 ORTHO05D008641 2.1e-17 92.8 89 61.8
Dinv25192 Davidia involucrata HOM05D006869 ORTHO05D008641 1.5e-15 86.7 108 48.1
Oeu015441.1 Olea europaea HOM05D006869 ORTHO05D008641 3.4e-15 85.5 80 61.2
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 9.9e-15 84.0 96 52.1
EL10Ac5g12174 Beta vulgaris HOM05D006869 ORTHO05D008641 1.3e-14 83.6 76 60.5
Rhsim07G0123600 Rhododendron simsii HOM05D006869 ORTHO05D008641 3.8e-14 82.0 75 61.3
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 6.4e-14 81.3 90 52.2
Ah.07g200090 Amaranthus hybridus HOM05D006869 ORTHO05D008641 1.4e-13 80.1 74 58.1
vmacro14155 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 4.2e-13 78.6 72 59.7
MBI04_g13865_MAGBIO Magnolia biondii HOM05D006869 ORTHO05D008641 9.3e-13 77.4 78 55.1
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 1.2e-12 77.0 84 53.6
Psat1g009440 Pisum sativum HOM05D006869 ORTHO05D008641 1.8e-11 73.2 59 67.8
Lsat_1_v5_gn_6_67180 Lactuca sativa HOM05D006869 ORTHO05D008641 6.7e-11 71.2 65 58.5
SalBow6G5905 Salvia bowleyana HOM05D006869 ORTHO05D008641 8.7e-11 70.9 71 49.3
Mapoly0009s0146 Marchantia polymorpha HOM05D006869 ORTHO05D008641 1.5e-10 70.1 93 44.1
Nitab4.5_0004658g0060 Nicotiana tabacum HOM05D006869 ORTHO05D008641 1.5e-10 70.1 74 54.1
Peaxi162Scf00497g00098 Petunia axillaris HOM05D006869 ORTHO05D008641 2.5e-10 69.3 70 55.7
Cc08_g02310 Coffea canephora HOM05D006869 ORTHO05D008641 3.3e-10 68.9 66 54.5
AagrBONN_evm.TU.Sc2ySwM_228.2858 Anthoceros agrestis HOM05D006869 ORTHO05D008641 1.1e-08 63.9 94 40.4
Haze_08288 Corylus avellana HOM05D006869 ORTHO05D008641 1.5e-07 60.1 42 73.8
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 1.3e-06 57.0 78 46.2
Zm00001eb390630 Zea mays HOM05D006869 ORTHO05D008641 2.2e-06 56.2 49 65.3
PGR142G3578 Punica granatum HOM05D006869 ORTHO05D008641 3.8e-06 55.5 62 46.8


User provided reference genes

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