Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3061 Capsella rubella HOM05D002739 ORTHO05D002877 2.9e-60 235.0 113 100.0
AT1G32280 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 6.1e-50 200.7 113 85.0
AL1G46440 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 3.7e-47 191.4 113 79.6
AT5G56480 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 8.0e-42 173.7 111 75.7
A10p13840 Brassica napus HOM05D002739 ORTHO05D002877 3.5e-37 158.3 111 69.4
BraA10t43477Z Brassica rapa HOM05D002739 ORTHO05D002877 3.5e-37 158.3 111 69.4
CARHR270120 Cardamine hirsuta HOM05D002739 ORTHO05D002877 7.7e-37 157.1 111 66.7
BolC9t57655H Brassica oleracea HOM05D002739 ORTHO05D002877 7.2e-35 150.6 110 68.2
AL8G32240 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 6.8e-33 144.1 98 71.4
C09p48080 Brassica napus HOM05D002739 ORTHO05D002877 2.6e-32 142.1 105 67.6
BcaB05g22276 Brassica carinata HOM05D002739 ORTHO05D002877 5.4e-30 134.4 98 66.3
CARHR270130 Cardamine hirsuta HOM05D002739 ORTHO05D002877 2.3e-28 129.0 100 62.0
BcaC04g20084 Brassica carinata HOM05D002739 ORTHO05D002877 6.6e-28 127.5 92 68.5
Duzib168G0958 Durio zibethinus HOM05D002739 ORTHO05D002877 7.5e-16 87.4 99 44.4
Cpa.g.sc84.11 Carica papaya HOM05D002739 ORTHO05D002877 6.4e-15 84.3 107 42.1
TWI74G0698 Tripterygium wilfordii HOM05D002739 ORTHO05D002877 2.4e-14 82.4 104 42.3
QL01p017875 Quercus lobata HOM05D002739 ORTHO05D002877 3.2e-14 82.0 113 38.1
Manes.14G006100 Manihot esculenta HOM05D002739 ORTHO05D002877 5.4e-14 81.3 109 36.7
BcaC04g20086 Brassica carinata HOM05D002739 ORTHO05D002877 9.2e-14 80.5 48 72.9
Haze_23193 Corylus avellana HOM05D002739 ORTHO05D002877 9.2e-14 80.5 101 39.6
QL04p013260 Quercus lobata HOM05D002739 ORTHO05D002877 4.6e-13 78.2 102 39.2
Manes.14G006000 Manihot esculenta HOM05D002739 ORTHO05D002877 1.7e-12 76.3 104 39.4
FvH4_3g29300 Fragaria vesca HOM05D002739 ORTHO05D002877 2.3e-12 75.9 101 35.6
Manes.04G135500 Manihot esculenta HOM05D002739 ORTHO05D002877 2.3e-12 75.9 59 54.2
Cfa009830 Carpinus fangiana HOM05D002739 ORTHO05D002877 3.9e-12 75.1 101 36.6
Ciclev10017652m.g Citrus clementina HOM05D002739 ORTHO05D002877 3.9e-12 75.1 95 37.9
QL04p013280 Quercus lobata HOM05D002739 ORTHO05D002877 3.9e-12 75.1 102 39.2
QL04p013222 Quercus lobata HOM05D002739 ORTHO05D002877 5.0e-12 74.7 104 39.4
Manes.11G031500 Manihot esculenta HOM05D002739 ORTHO05D002877 8.6e-12 73.9 86 40.7
Haze_18708 Corylus avellana HOM05D002739 ORTHO05D002877 1.1e-11 73.6 74 50.0
Potri.001G023200 Populus trichocarpa HOM05D002739 ORTHO05D002877 1.1e-11 73.6 102 36.3
PSO339G1495 Papaver somniferum HOM05D002739 ORTHO05D002877 1.9e-11 72.8 87 44.8
Nn7g36463 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.5e-11 72.4 107 37.4
PSO384G0435 Papaver somniferum HOM05D002739 ORTHO05D002877 2.5e-11 72.4 95 44.2
CiPaw.13G010100 Carya illinoinensis HOM05D002739 ORTHO05D002877 3.3e-11 72.0 71 45.1
COL.COLO4_04118 Corchorus olitorius HOM05D002739 ORTHO05D002877 3.3e-11 72.0 62 53.2
CSS0000269 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 4.3e-11 71.6 97 37.1
CSS0014844 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 4.3e-11 71.6 97 37.1
CSS0046368 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 4.3e-11 71.6 97 37.1
CSS0048223 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 4.3e-11 71.6 97 37.1
RcHm_v2.0_Chr7g0218541 Rosa chinensis HOM05D002739 ORTHO05D002877 4.3e-11 71.6 102 34.3
AL7G17970 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 7.3e-11 70.9 104 34.6
AT4G33550 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 7.3e-11 70.9 104 33.7
QL04p013297 Quercus lobata HOM05D002739 ORTHO05D002877 7.3e-11 70.9 71 46.5
FvH4_7g02210 Fragaria vesca HOM05D002739 ORTHO05D002877 9.5e-11 70.5 97 34.0
QL04p013227 Quercus lobata HOM05D002739 ORTHO05D002877 9.5e-11 70.5 102 36.3
Sabra01G0017500 Salix brachista HOM05D002739 ORTHO05D002877 9.5e-11 70.5 104 32.7
HanXRQChr01g0020811 Helianthus annuus HOM05D002739 ORTHO05D002877 1.2e-10 70.1 108 34.3
BcaC01g00985 Brassica carinata HOM05D002739 ORTHO05D002877 1.6e-10 69.7 104 33.7
MD02G1296300 Malus domestica HOM05D002739 ORTHO05D002877 1.6e-10 69.7 101 34.7
Sp7g31290 Schrenkiella parvula HOM05D002739 ORTHO05D002877 1.6e-10 69.7 104 34.6
THA.LOC104819118 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 1.6e-10 69.7 57 49.1
BcaB03g12793 Brassica carinata HOM05D002739 ORTHO05D002877 2.1e-10 69.3 104 33.7
FAN10G1712 Fragaria x ananassa HOM05D002739 ORTHO05D002877 2.1e-10 69.3 99 34.3
CARHR241650 Cardamine hirsuta HOM05D002739 ORTHO05D002877 2.8e-10 68.9 104 34.6
SGA_v2.0_scaffold24G10703 Striga asiatica HOM05D002739 ORTHO05D002877 2.8e-10 68.9 103 35.0
TAR623G0756 Trochodendron aralioides HOM05D002739 ORTHO05D002877 2.8e-10 68.9 101 32.7
Aqoxy2G00278 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 3.6e-10 68.6 107 38.3
Dinv36202 Davidia involucrata HOM05D002739 ORTHO05D002877 3.6e-10 68.6 88 38.6
Thhalv10026604m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 3.6e-10 68.6 81 42.0
TWI38G1066 Tripterygium wilfordii HOM05D002739 ORTHO05D002877 3.6e-10 68.6 100 32.0
Prupe.2G028300 Prunus persica HOM05D002739 ORTHO05D002877 4.7e-10 68.2 108 32.4
Actinidia19441 Actinidia chinensis HOM05D002739 ORTHO05D002877 6.2e-10 67.8 111 32.4
Cfa021004 Carpinus fangiana HOM05D002739 ORTHO05D002877 6.2e-10 67.8 70 47.1
Atru.chr6.1312 Acer truncatum HOM05D002739 ORTHO05D002877 8.1e-10 67.4 106 32.1
PGR031G2149 Punica granatum HOM05D002739 ORTHO05D002877 1.1e-09 67.0 61 49.2
PGR031G3191 Punica granatum HOM05D002739 ORTHO05D002877 1.1e-09 67.0 65 46.2
THA.LOC104826714 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 1.1e-09 67.0 57 47.4
Ciclev10017446m.g Citrus clementina HOM05D002739 ORTHO05D002877 1.8e-09 66.2 106 33.0
PSO384G3631 Papaver somniferum HOM05D002739 ORTHO05D002877 1.8e-09 66.2 100 37.0
Zm00001eb369450 Zea mays HOM05D002739 ORTHO05D002877 1.8e-09 66.2 59 49.2
Aqoxy2G00287 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 2.3e-09 65.9 66 45.5
Ciclev10017226m.g Citrus clementina HOM05D002739 ORTHO05D002877 2.3e-09 65.9 102 33.3
Ciclev10017598m.g Citrus clementina HOM05D002739 ORTHO05D002877 2.3e-09 65.9 107 37.4
Haze_03109 Corylus avellana HOM05D002215 ORTHO05D002238 2.3e-09 65.9 66 47.0
QL04p013244 Quercus lobata HOM05D002739 ORTHO05D002877 2.3e-09 65.9 105 34.3
GSVIVG01000855001 Vitis vinifera HOM05D002739 ORTHO05D002877 2.3e-09 65.9 65 41.5
PSO339G0161 Papaver somniferum HOM05D002739 ORTHO05D002877 3.1e-09 65.5 104 32.7
Prupe.4G257900 Prunus persica HOM05D002739 ORTHO05D002877 3.1e-09 65.5 61 45.9
Hund15707 Selenicereus undatus HOM05D002739 ORTHO05D002877 3.1e-09 65.5 98 35.7
MBI13_g04764_MAGBIO Magnolia biondii HOM05D002739 ORTHO05D002877 4.0e-09 65.1 59 52.5
CANSAT80G1481 Cannabis sativa HOM05D002739 ORTHO05D002877 5.2e-09 64.7 81 37.0
PSO384G3480 Papaver somniferum HOM05D002739 ORTHO05D002877 5.2e-09 64.7 107 33.6
Prupe.2G028100 Prunus persica HOM05D002739 ORTHO05D002877 5.2e-09 64.7 104 34.6
Sabra09G0035300 Salix brachista HOM05D002739 ORTHO05D002877 5.2e-09 64.7 104 32.7
Sabra09G0035400 Salix brachista HOM05D002739 ORTHO05D002877 5.2e-09 64.7 104 32.7
Sabra09G0035500 Salix brachista HOM05D002739 ORTHO05D002877 5.2e-09 64.7 104 32.7
Ciclev10017233m.g Citrus clementina HOM05D002739 ORTHO05D002877 6.8e-09 64.3 65 44.6
Cc02_g29460 Coffea canephora HOM05D002739 ORTHO05D002877 6.8e-09 64.3 106 29.2
Thhalv10001126m.g Eutrema salsugineum HOM05D011315 ORTHO05D013409 6.8e-09 64.3 103 35.0
Thhalv10026851m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 6.8e-09 64.3 63 44.4
HanXRQChr14g0441021 Helianthus annuus HOM05D002739 ORTHO05D002877 6.8e-09 64.3 95 35.8
PSO339G6632 Papaver somniferum HOM05D002739 ORTHO05D002877 6.8e-09 64.3 108 33.3
PSO384G1774 Papaver somniferum HOM05D002739 ORTHO05D002877 6.8e-09 64.3 107 34.6
PSO384G3657 Papaver somniferum HOM05D002739 ORTHO05D002877 6.8e-09 64.3 107 34.6
Aqoxy2G00281 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 8.9e-09 63.9 100 34.0
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 8.9e-09 63.9 107 31.8
AT4G30880 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 8.9e-09 63.9 63 42.9
BcaB03g12794 Brassica carinata HOM05D002739 ORTHO05D002877 8.9e-09 63.9 103 29.1
Ca_11246_v3 Cicer arietinum L. HOM05D002739 ORTHO05D002877 8.9e-09 63.9 87 35.6
Migut.D00796 Erythranthe guttata HOM05D002739 ORTHO05D002877 8.9e-09 63.9 95 32.6
Eucgr.G03260 Eucalyptus grandis HOM05D002739 ORTHO05D002877 8.9e-09 63.9 62 46.8
Aqoxy2G00284 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 1.2e-08 63.5 108 33.3
BcaB03g12664 Brassica carinata HOM05D002739 ORTHO05D002877 1.2e-08 63.5 57 43.9
Ciclev10017249m.g Citrus clementina HOM05D002739 ORTHO05D002877 1.2e-08 63.5 99 34.3
Ciclev10018012m.g Citrus clementina HOM05D002739 ORTHO05D002877 1.2e-08 63.5 98 33.7
Sabra09G0035200 Salix brachista HOM05D002739 ORTHO05D002877 1.2e-08 63.5 104 31.7
TPR.G22564 Trifolium pratense HOM05D002739 ORTHO05D002877 1.2e-08 63.5 103 33.0
AL7G21220 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 1.5e-08 63.2 63 42.9
ECA238G2259 Erigeron canadensis HOM05D002739 ORTHO05D002877 1.5e-08 63.2 109 33.0
Potri.009G049300 Populus trichocarpa HOM05D002739 ORTHO05D002877 1.5e-08 63.2 104 33.7
Thecc.09G243000 Theobroma cacao HOM05D002739 ORTHO05D002877 1.5e-08 63.2 60 45.0
GSVIVG01000856001 Vitis vinifera HOM05D002739 ORTHO05D002877 1.5e-08 63.2 65 41.5
Carub.0007s0967 Capsella rubella HOM05D002739 ORTHO05D002877 2.0e-08 62.8 63 44.4
CARHR238780 Cardamine hirsuta HOM05D002739 ORTHO05D002877 2.0e-08 62.8 111 31.5
Sp7g28750 Schrenkiella parvula HOM05D002739 ORTHO05D002877 2.0e-08 62.8 63 44.4
THA.LOC104826487 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 2.0e-08 62.8 57 45.6
ATR0721G147 Amborella trichopoda HOM05D002739 ORTHO05D002877 2.6e-08 62.4 95 34.7
ECA236G2864 Erigeron canadensis HOM05D002739 ORTHO05D002877 2.6e-08 62.4 58 44.8
Oeu027475.1 Olea europaea HOM05D002739 ORTHO05D002877 2.6e-08 62.4 101 30.7
PSO384G1869 Papaver somniferum HOM05D002739 ORTHO05D002877 2.6e-08 62.4 103 30.1
MSTRG.21276 Avicennia marina HOM05D002739 ORTHO05D002877 3.4e-08 62.0 63 44.4
EL10Ac4g08094 Beta vulgaris HOM05D002739 ORTHO05D002877 3.4e-08 62.0 63 42.9
Aa31sc250G70 Aethionema arabicum HOM05D011315 ORTHO05D013409 4.4e-08 61.6 58 44.8
Aqoxy2G02507 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 4.4e-08 61.6 85 38.8
AT2G13295 Arabidopsis thaliana HOM05D011315 ORTHO05D013409 4.4e-08 61.6 71 39.4
Carub.0003s2392 Capsella rubella HOM05D011315 ORTHO05D013409 4.4e-08 61.6 80 40.0
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 4.4e-08 61.6 67 40.3
Potri.001G023300 Populus trichocarpa HOM05D002739 ORTHO05D002877 4.4e-08 61.6 65 43.1
Sabra01G0017600 Salix brachista HOM05D002739 ORTHO05D002877 4.4e-08 61.6 106 33.0
BcaC09g51875 Brassica carinata HOM05D002739 ORTHO05D002877 7.5e-08 60.8 63 42.9
Carub.0007s0690 Capsella rubella HOM05D002739 ORTHO05D002877 7.5e-08 60.8 77 40.3
COL.COLO4_36502 Corchorus olitorius HOM05D002739 ORTHO05D002877 7.5e-08 60.8 65 43.1
Lalb_Chr04g0263901 Lupinus albus HOM05D002739 ORTHO05D002877 7.5e-08 60.8 96 33.3
Medtr4g077180 Medicago truncatula HOM05D002739 ORTHO05D002877 7.5e-08 60.8 104 28.8
Nn2g15045 Nelumbo nucifera HOM05D002739 ORTHO05D002877 7.5e-08 60.8 109 32.1
Nn7g36443 Nelumbo nucifera HOM05D002739 ORTHO05D002877 7.5e-08 60.8 57 45.6
Nn7g36467 Nelumbo nucifera HOM05D002739 ORTHO05D002877 7.5e-08 60.8 97 33.0
Nn7g38449 Nelumbo nucifera HOM05D002739 ORTHO05D002877 7.5e-08 60.8 57 45.6
CiPaw.13G010000 Carya illinoinensis HOM05D002739 ORTHO05D002877 9.9e-08 60.5 97 36.1
Medtr4g076150 Medicago truncatula HOM05D002739 ORTHO05D002877 9.9e-08 60.5 97 30.9
Nn2g15046 Nelumbo nucifera HOM05D002739 ORTHO05D002877 9.9e-08 60.5 105 31.4
Cpa.g.sc84.10 Carica papaya HOM05D002739 ORTHO05D002877 1.3e-07 60.1 64 39.1
MD02G1296400 Malus domestica HOM05D002739 ORTHO05D002877 1.3e-07 60.1 80 33.8
C01p39980 Brassica napus HOM05D011315 ORTHO05D013409 1.7e-07 59.7 58 43.1
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.7e-07 59.7 73 39.7
TAR623G1716 Trochodendron aralioides HOM05D002739 ORTHO05D002877 1.7e-07 59.7 97 32.0
A01p31390 Brassica napus HOM05D011315 ORTHO05D013409 2.2e-07 59.3 58 43.1
BraA01t03264Z Brassica rapa HOM05D011315 ORTHO05D013409 2.2e-07 59.3 58 43.1
Thecc.09G243100 Theobroma cacao HOM05D002739 ORTHO05D002877 2.2e-07 59.3 76 40.8
Os03g0369100 Oryza sativa ssp. japonica HOM05D002739 ORTHO05D002877 2.9e-07 58.9 110 31.8
QL04p013238 Quercus lobata HOM05D002739 ORTHO05D002877 2.9e-07 58.9 88 37.5
Zm00001eb138660 Zea mays HOM05D002739 ORTHO05D002877 3.7e-07 58.5 64 45.3
Zm00001eb369440 Zea mays HOM05D002739 ORTHO05D002877 3.7e-07 58.5 57 45.6
Aa31LG2G19500 Aethionema arabicum HOM05D002739 ORTHO05D002877 4.9e-07 58.2 107 31.8
Lj3g0006865 Lotus japonicus HOM05D002739 ORTHO05D002877 4.9e-07 58.2 101 26.7
Os11g0484700 Oryza sativa ssp. japonica HOM05D002739 ORTHO05D002877 4.9e-07 58.2 74 40.5
HPP92_003585 Vanilla planifolia HOM05D002739 ORTHO05D002877 4.9e-07 58.2 89 30.3
VMungo0647G0462 Vigna mungo HOM05D002739 ORTHO05D002877 4.9e-07 58.2 106 32.1
BcaC01g01134 Brassica carinata HOM05D002739 ORTHO05D002877 6.4e-07 57.8 98 31.6
BolC3t21155H Brassica oleracea HOM05D002739 ORTHO05D002877 6.4e-07 57.8 98 31.6
Carub.0003s2393 Capsella rubella HOM05D011315 ORTHO05D013409 6.4e-07 57.8 112 33.0
Psat7g179880 Pisum sativum HOM05D002739 ORTHO05D002877 6.4e-07 57.8 57 43.9
TAR622G0220 Trochodendron aralioides HOM05D002739 ORTHO05D002877 6.4e-07 57.8 72 38.9
GSVIVG01000854001 Vitis vinifera HOM05D002739 ORTHO05D002877 6.4e-07 57.8 96 36.5
BcaC01g00986 Brassica carinata HOM05D002739 ORTHO05D002877 8.3e-07 57.4 97 29.9
C03p88470 Brassica napus HOM05D002739 ORTHO05D002877 8.3e-07 57.4 98 31.6
Hma1.2p1_0817F.1_g223085 Hydrangea macrophylla HOM05D002739 ORTHO05D002877 8.3e-07 57.4 53 43.4
Hma1.2p1_2313F.1_g319610 Hydrangea macrophylla HOM05D002739 ORTHO05D002877 8.3e-07 57.4 53 43.4
PSO339G0568 Papaver somniferum HOM05D002739 ORTHO05D002877 1.1e-06 57.0 64 39.1
Phvul.011G024000 Phaseolus vulgaris HOM05D002739 ORTHO05D002877 1.1e-06 57.0 57 36.8
Glyma.11G095900 Glycine max HOM05D002739 ORTHO05D002877 1.4e-06 56.6 87 28.7
Zm00001eb419150 Zea mays HOM05D042461 ORTHO05D002877 1.4e-06 56.6 102 33.3
PSO384G1879 Papaver somniferum HOM05D002739 ORTHO05D002877 1.9e-06 56.2 91 33.0
DCAR_022358 Daucus carota HOM05D002739 ORTHO05D002877 2.4e-06 55.8 89 32.6
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 2.4e-06 55.8 102 31.4
BcaNung03432 Brassica carinata HOM05D002739 ORTHO05D002877 3.2e-06 55.5 62 40.3
BolC1t00795H Brassica oleracea HOM05D002739 ORTHO05D002877 3.2e-06 55.5 59 42.4
Aqoxy4G02010 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 4.1e-06 55.1 113 33.6
BcaB01g02799 Brassica carinata HOM05D004409 ORTHO05D005292 4.1e-06 55.1 112 30.4
Lsat_1_v5_gn_1_97381 Lactuca sativa HOM05D002739 ORTHO05D002877 4.1e-06 55.1 86 33.7
A01p07300 Brassica napus HOM05D002739 ORTHO05D002877 5.4e-06 54.7 59 40.7
BraA01t00679Z Brassica rapa HOM05D002739 ORTHO05D002877 5.4e-06 54.7 59 40.7
Sc14g0005800 Simmondsia chinensis HOM05D002739 ORTHO05D002877 5.4e-06 54.7 53 43.4
arahy.Tifrunner.gnm1.ann1.7A4EFU Arachis hypogaea HOM05D018715 ORTHO05D002877 7.1e-06 54.3 65 36.9
arahy.Tifrunner.gnm1.ann1.K6R24J Arachis hypogaea HOM05D018715 ORTHO05D002877 7.1e-06 54.3 65 36.9
C01p08060 Brassica napus HOM05D002739 ORTHO05D002877 7.1e-06 54.3 59 40.7
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 9.2e-06 53.9 114 31.6
Os01g0800600 Oryza sativa ssp. japonica HOM05D002739 ORTHO05D002877 9.2e-06 53.9 53 47.2


User provided reference genes

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