Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 3.4e-198 696.0 827 100.0
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 7.4e-129 465.7 821 85.6
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 1.4e-127 461.5 814 82.9
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 5.3e-127 459.5 819 85.0
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 2.5e-124 450.7 816 82.8
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 3.0e-122 443.7 831 84.0
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 5.0e-117 426.4 815 83.8
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 7.2e-116 422.5 817 84.0
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 4.4e-113 413.3 818 84.5
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 1.0e-109 402.1 818 74.4
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 4.9e-104 383.3 822 82.1
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 4.9e-104 383.3 822 82.1
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 6.3e-104 382.9 822 82.1
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 4.3e-84 317.0 819 76.3
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 6.6e-77 293.1 242 66.9
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 8.6e-77 292.7 242 66.9
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 7.3e-76 289.7 242 66.5
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 7.8e-62 243.0 779 70.7
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 1.8e-58 231.9 694 81.6
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.4e-55 222.2 774 73.5
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 4.2e-55 220.7 729 76.7
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 7.1e-55 219.9 693 80.4
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 9.3e-55 219.5 217 60.4
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 2.7e-54 218.0 180 66.7
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 7.9e-54 216.5 805 72.3
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 2.3e-53 214.9 231 53.2
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 5.1e-53 213.8 745 75.2
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.9e-52 211.8 145 73.1
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 3.3e-52 211.1 147 72.8
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 7.4e-52 209.9 740 73.8
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 1.6e-51 208.8 176 63.6
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 3.7e-51 207.6 180 62.2
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 6.2e-51 206.8 187 59.4
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 8.1e-51 206.5 733 70.9
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 1.1e-50 206.1 207 54.1
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 1.4e-50 205.7 221 52.5
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 1.8e-50 205.3 708 76.7
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 3.1e-50 204.5 173 59.0
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 3.1e-50 204.5 150 69.3
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 4.0e-50 204.1 726 71.8
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 4.0e-50 204.1 140 70.0
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 4.0e-50 204.1 211 53.6
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 5.3e-50 203.8 211 57.3
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 6.9e-50 203.4 176 64.2
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.5e-49 202.2 177 57.6
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 3.4e-49 201.1 170 62.9
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 1.3e-48 199.1 692 77.6
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.3e-48 199.1 795 66.9
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.2e-48 198.4 692 77.6
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.2e-48 198.4 692 77.7
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.8e-48 197.6 692 78.8
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 3.8e-48 197.6 188 59.6
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 3.8e-48 197.6 170 63.5
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.4e-47 195.7 175 61.1
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 1.4e-47 195.7 729 76.7
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 1.4e-47 195.7 253 49.0
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 2.4e-47 194.9 123 75.6
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 2.4e-47 194.9 784 67.2
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 7.1e-47 193.4 125 72.8
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 1.6e-46 192.2 702 72.4
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.6e-46 192.2 708 75.4
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 1.6e-46 192.2 150 64.7
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 3.5e-46 191.0 244 51.2
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.5e-46 191.0 691 75.5
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 4.6e-46 190.7 151 62.3
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 7.9e-46 189.9 722 72.7
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.0e-45 189.5 172 61.6
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 1.0e-45 189.5 179 57.0
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.3e-45 189.1 133 68.4
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 3.9e-45 187.6 151 60.9
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.1e-45 187.2 149 63.1
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 6.7e-45 186.8 181 56.4
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 6.7e-45 186.8 181 56.4
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 6.7e-45 186.8 209 54.1
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 8.7e-45 186.4 210 53.8
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 8.7e-45 186.4 246 51.2
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 1.9e-44 185.3 722 72.3
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 9.6e-44 183.0 721 70.5
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 1.3e-43 182.6 133 67.7
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.6e-43 182.2 123 73.2
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 3.7e-43 181.0 198 55.1
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 4.8e-43 180.6 678 72.7
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 4.8e-43 180.6 124 71.0
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 6.2e-43 180.3 177 58.8
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 6.2e-43 180.3 149 61.1
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 8.2e-43 179.9 153 61.4
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.1e-42 179.5 123 71.5
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 1.8e-42 178.7 720 70.0
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 3.1e-42 177.9 148 63.5
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 5.3e-42 177.2 148 62.8
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 9.0e-42 176.4 739 60.5
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.2e-41 176.0 132 65.9
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 3.4e-41 174.5 149 59.1
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 5.8e-41 173.7 163 52.8
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 7.6e-41 173.3 150 56.0
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 2.5e-39 168.3 119 73.9
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 4.2e-39 167.5 122 67.2
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 1.9e-36 158.7 119 79.0
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 3.3e-36 157.9 636 78.6
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 5.7e-36 157.1 203 47.3
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 3.7e-35 154.5 207 46.4
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 3.4e-33 147.9 98 72.4
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 3.4e-33 147.9 127 54.3
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 1.0e-32 146.4 111 64.0
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 2.5e-31 141.7 134 56.0
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 2.1e-30 138.7 111 60.4
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 3.0e-29 134.8 107 60.7
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.1e-29 134.0 104 61.5
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 6.7e-29 133.7 149 52.3
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 6.7e-29 133.7 111 68.5
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.3e-27 129.4 114 54.4
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 1.7e-27 129.0 163 45.4
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 3.7e-27 127.9 124 56.5
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 2.4e-26 125.2 107 70.1
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 4.1e-26 124.4 111 55.0
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.5e-25 122.5 132 50.8
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 2.6e-25 121.7 88 84.1
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 1.1e-23 116.3 94 59.6
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 2.7e-22 111.7 110 63.6
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.0e-21 109.8 176 43.8
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 6.7e-21 107.1 80 63.8
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.7e-19 102.4 111 48.6
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 1.0e-16 93.2 66 63.6
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 2.2e-16 92.0 72 63.9
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 1.4e-13 82.8 82 50.0
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 2.3e-13 82.0 61 63.9
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 4.4e-12 77.8 59 64.4
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 4.4e-12 77.8 98 46.9
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 4.8e-11 74.3 47 78.7
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 5.3e-10 70.9 55 63.6
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 1.7e-08 65.9 118 32.2
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 2.5e-07 62.0 116 33.6
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 1.6e-06 59.3 116 32.8
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 4.7e-06 57.8 139 27.3
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 4.7e-06 57.8 117 31.6
GSVIVG01008078001 Vitis vinifera HOM05D004079 ORTHO05D005437 4.7e-06 57.8 121 32.2
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 6.1e-06 57.4 110 31.8
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 6.1e-06 57.4 104 31.7


User provided reference genes

Program Settings