Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 3.2e-119 431.8 219 100.0
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 1.5e-108 396.4 222 91.0
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 4.4e-105 384.8 222 88.7
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 5.8e-105 384.4 223 89.2
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 2.2e-104 382.5 222 89.2
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 5.1e-101 371.3 222 87.4
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.1e-100 370.2 222 85.1
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 2.5e-100 369.0 222 85.6
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 9.5e-100 367.1 222 85.1
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 9.5e-100 367.1 221 84.6
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 9.5e-100 367.1 221 84.6
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 9.5e-100 367.1 222 85.1
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 1.9e-92 342.8 233 76.4
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.7e-88 329.7 219 72.6
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 5.4e-87 324.7 218 72.5
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 7.8e-86 320.9 219 72.1
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 7.8e-86 320.9 222 70.7
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 4.3e-84 315.1 220 69.5
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.3e-83 313.5 222 68.9
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 8.1e-83 310.8 223 68.6
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.8e-82 309.7 217 70.0
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.4e-82 309.3 220 69.5
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 5.3e-82 308.1 218 68.3
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 5.3e-82 308.1 216 69.9
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 6.9e-82 307.8 221 70.1
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 6.9e-82 307.8 216 69.4
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 1.2e-81 307.0 219 67.6
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 1.5e-81 306.6 220 69.1
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 2.0e-81 306.2 218 67.0
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 2.6e-81 305.8 218 68.3
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 3.4e-81 305.4 218 66.5
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 4.5e-81 305.1 218 66.5
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 4.5e-81 305.1 217 67.7
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.5e-81 305.1 216 69.0
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 5.8e-81 304.7 216 69.0
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 7.6e-81 304.3 217 70.5
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 1.3e-80 303.5 217 67.3
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 1.3e-80 303.5 218 67.9
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.9e-80 302.4 216 68.5
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 2.4e-79 299.3 223 66.8
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 3.2e-79 298.9 222 64.9
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 4.2e-79 298.5 218 66.5
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 4.2e-79 298.5 216 67.1
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 7.1e-79 297.7 222 64.9
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 9.3e-79 297.4 219 66.7
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 1.2e-78 297.0 217 68.7
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 2.1e-78 296.2 218 67.0
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 2.1e-78 296.2 217 65.9
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 2.7e-78 295.8 219 66.2
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 3.5e-78 295.4 217 66.8
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 6.0e-78 294.7 217 65.4
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 6.0e-78 294.7 219 66.2
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 6.0e-78 294.7 215 67.0
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 1.0e-77 293.9 217 65.4
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.0e-77 293.9 217 65.9
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 1.3e-77 293.5 217 65.4
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 2.3e-77 292.7 217 64.5
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 3.0e-77 292.4 218 63.3
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 5.1e-77 291.6 221 64.7
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 6.6e-77 291.2 223 64.6
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 6.6e-77 291.2 217 67.3
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 6.6e-77 291.2 218 65.6
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 8.7e-77 290.8 217 67.3
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 1.1e-76 290.4 218 64.2
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.1e-76 290.4 216 64.8
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 1.1e-76 290.4 219 65.8
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 1.5e-76 290.0 218 64.2
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.5e-76 290.0 215 66.5
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.5e-76 290.0 222 63.5
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 1.9e-76 289.7 214 64.5
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 1.9e-76 289.7 216 64.8
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.9e-76 289.7 234 63.7
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 3.3e-76 288.9 215 65.6
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 5.6e-76 288.1 248 59.3
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 5.6e-76 288.1 219 65.8
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 9.6e-76 287.3 218 64.2
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.3e-75 287.0 215 64.2
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.1e-75 286.2 217 66.4
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 2.1e-75 286.2 217 63.6
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 2.1e-75 286.2 216 63.4
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.6e-75 285.4 225 61.3
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 4.8e-75 285.0 217 66.8
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 6.2e-75 284.6 217 65.0
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 8.1e-75 284.3 218 63.3
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 9.0e-74 280.8 228 61.0
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 4.5e-73 278.5 217 62.2
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 7.6e-73 277.7 208 64.9
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.3e-72 276.9 218 62.8
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 1.7e-72 276.6 218 61.5
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 2.9e-72 275.8 223 62.3
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 8.4e-72 274.2 260 55.0
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.4e-71 273.5 231 61.0
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 4.2e-71 271.9 218 60.6
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 9.3e-71 270.8 219 61.2
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.2e-70 270.4 240 59.2
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.2e-70 270.4 218 59.6
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.6e-70 270.0 228 59.6
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 2.1e-70 269.6 211 64.5
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 1.8e-69 266.5 219 59.4
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 5.1e-69 265.0 255 56.1
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.9e-68 263.1 217 59.0
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 5.6e-68 261.5 217 57.6
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 9.6e-68 260.8 167 70.7
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.3e-67 260.4 217 59.0
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 2.1e-67 259.6 221 58.4
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 4.8e-67 258.5 154 75.3
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 9.0e-66 254.2 134 91.8
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.0e-65 253.1 154 72.7
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 5.8e-65 251.5 219 56.2
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.7e-64 250.0 249 53.8
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 4.9e-64 248.4 217 59.4
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 4.6e-62 241.9 217 57.1
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 6.0e-62 241.5 211 59.2
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 1.9e-60 236.5 217 55.8
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 3.4e-57 225.7 174 61.5
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 2.2e-56 223.0 229 50.2
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.1e-54 216.5 217 52.1
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.8e-53 213.4 191 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 6.7e-53 211.5 245 50.6
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 1.6e-51 206.8 120 75.8
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 1.1e-47 194.1 208 47.6
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 1.4e-47 193.7 111 77.5
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 3.2e-47 192.6 221 48.0
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 2.1e-46 189.9 235 43.8
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 6.1e-38 161.8 251 39.0
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 5.2e-37 158.7 156 49.4
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 5.3e-34 148.7 178 46.1
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 7.0e-34 148.3 100 65.0
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 3.2e-23 112.8 243 35.4
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.2e-11 73.6 41 80.5
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 4.9e-11 72.4 84 48.8
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 7.8e-09 65.1 43 67.4
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 3.8e-08 62.8 34 79.4
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 8.6e-08 61.6 38 68.4
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.3e-07 59.3 28 96.4
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 2.1e-06 57.0 188 23.4
Lj2A178T48 Lonicera japonica HOM05D001916 ORTHO05D003272 8.0e-06 55.1 166 25.3


User provided reference genes

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