Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 2.2e-175 619.0 342 100.0
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.0e-148 530.4 352 87.5
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 5.6e-147 524.6 352 88.6
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 2.0e-144 516.2 351 85.5
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 5.6e-139 498.0 355 83.9
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 1.5e-128 463.4 355 81.7
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 1.7e-127 459.9 347 77.5
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 1.9e-126 456.4 344 75.0
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 1.0e-124 450.7 344 78.5
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 1.0e-124 450.7 344 78.5
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 8.7e-124 447.6 350 73.4
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 5.3e-121 438.3 360 74.7
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 2.6e-120 436.0 352 76.7
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 5.3e-105 385.2 324 71.0
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 2.1e-77 293.5 226 70.8
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 1.8e-76 290.4 259 62.5
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 2.6e-75 286.6 290 58.3
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 7.4e-75 285.0 267 60.7
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.3e-74 284.3 268 60.1
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 3.7e-74 282.7 414 48.8
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 1.1e-73 281.2 305 57.0
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 7.0e-73 278.5 271 59.0
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 7.0e-73 278.5 294 56.8
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 9.1e-73 278.1 307 55.4
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.2e-72 277.7 275 58.5
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.6e-72 277.3 226 66.4
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.0e-72 276.9 260 61.9
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 5.9e-72 275.4 306 54.6
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 2.2e-71 273.5 265 58.5
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 8.5e-71 271.6 287 56.4
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 8.5e-71 271.6 306 53.9
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.5e-70 270.8 264 61.4
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.5e-70 270.8 226 67.7
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 1.9e-70 270.4 276 57.2
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 4.2e-70 269.2 278 55.8
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 7.2e-70 268.5 266 58.6
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.2e-69 267.7 265 57.7
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.6e-69 267.3 247 62.3
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 2.7e-69 266.5 299 52.8
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 4.7e-69 265.8 312 54.5
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 1.4e-68 264.2 222 62.2
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 5.2e-68 262.3 222 62.2
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 6.7e-68 261.9 273 56.8
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 1.2e-67 261.2 306 52.3
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 2.6e-67 260.0 248 62.1
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 2.6e-67 260.0 265 58.1
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.3e-66 257.7 222 64.4
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 1.3e-66 257.7 352 47.7
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 1.7e-66 257.3 224 61.6
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 1.7e-66 257.3 227 62.1
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 2.2e-66 256.9 326 51.8
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 2.8e-66 256.5 290 55.2
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 8.2e-66 255.0 278 55.0
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 1.1e-65 254.6 272 54.4
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 1.8e-65 253.8 221 61.5
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.8e-65 253.8 245 60.0
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 3.1e-65 253.1 281 54.8
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 4.1e-65 252.7 307 50.2
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 7.0e-65 251.9 311 51.1
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 2.7e-64 250.0 267 55.1
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 4.5e-64 249.2 308 52.3
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.3e-63 247.7 237 55.7
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 2.2e-63 246.9 286 53.8
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 5.0e-63 245.7 246 59.8
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 6.5e-63 245.4 228 59.6
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 6.5e-63 245.4 234 59.0
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.5e-62 244.2 284 54.2
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 2.5e-62 243.4 278 54.3
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 4.2e-62 242.7 264 56.1
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 7.2e-62 241.9 244 58.6
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.2e-61 241.1 273 54.6
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 1.6e-61 240.7 300 50.7
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 3.6e-61 239.6 254 55.1
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 4.7e-61 239.2 287 52.6
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 6.1e-61 238.8 266 56.4
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.4e-60 237.7 220 59.1
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.4e-60 237.7 282 52.5
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.4e-60 237.7 282 52.5
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 2.3e-60 236.9 273 53.8
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.0e-60 236.1 294 51.4
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 8.8e-60 235.0 237 56.1
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-59 234.6 283 52.7
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.5e-59 234.2 322 53.4
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.0e-59 233.8 245 55.1
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.4e-59 233.0 320 48.8
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.4e-59 232.6 283 51.6
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 5.7e-59 232.3 290 52.4
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 1.7e-58 230.7 186 65.6
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.7e-58 230.7 215 60.9
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.8e-58 229.9 340 45.9
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 4.8e-58 229.2 230 55.2
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 4.8e-58 229.2 231 55.4
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 4.8e-58 229.2 235 53.2
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.1e-57 226.1 221 57.0
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 5.4e-57 225.7 311 47.9
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 7.0e-57 225.3 282 51.4
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 7.0e-57 225.3 246 54.1
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 1.0e-55 221.5 155 74.8
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 1.3e-55 221.1 237 54.0
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 1.7e-55 220.7 389 44.7
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 1.5e-54 217.6 201 61.7
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 7.2e-54 215.3 212 56.6
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.6e-53 214.2 230 52.2
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 1.6e-53 214.2 190 64.2
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 6.1e-53 212.2 164 65.2
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 1.8e-52 210.7 268 50.0
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.8e-50 203.4 299 50.2
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.4e-49 200.3 283 47.7
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 5.9e-48 195.7 192 55.7
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 2.3e-47 193.7 370 37.6
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.1e-45 187.2 361 43.8
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 4.7e-45 186.0 301 45.8
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 7.5e-43 178.7 282 44.3
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.1e-41 174.9 302 45.0
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 1.1e-41 174.9 187 51.9
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.7e-40 170.2 161 56.5
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 7.8e-40 168.7 263 41.4
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.5e-38 164.5 274 40.9
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.6e-37 161.0 226 47.3
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.6e-37 161.0 287 42.5
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 4.7e-37 159.5 258 45.0
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 1.8e-36 157.5 135 66.7
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.8e-36 157.5 337 38.6
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 1.2e-35 154.8 190 51.6
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.2e-33 146.7 145 58.6
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 1.0e-31 141.7 144 56.2
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 1.0e-31 141.7 110 66.4
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.0e-31 140.2 105 66.7
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.9e-30 137.5 107 65.4
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 1.8e-28 131.0 209 41.6
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 9.9e-27 125.2 153 52.3
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 2.2e-26 124.0 105 59.0
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 4.9e-26 122.9 139 49.6
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 1.1e-25 121.7 313 33.9
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.7e-24 117.1 70 75.7
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 6.0e-24 115.9 97 60.8
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.0e-23 115.2 70 74.3
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.0e-23 115.2 70 80.0
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.0e-23 113.6 69 75.4
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.9e-23 113.2 98 60.2
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.6e-21 106.7 186 41.4
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.4e-20 104.8 227 37.0
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 3.1e-20 103.6 103 45.6
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 2.0e-19 100.9 283 32.9
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.2e-18 97.4 105 46.7
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 7.8e-16 89.0 202 36.1
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.5e-14 84.7 191 33.0
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.5e-11 74.7 82 51.2
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 7.6e-11 72.4 99 36.4
A07p10840 Brassica napus HOM05D004030 ORTHO05D041112 1.9e-09 67.8 51 62.7
BraA07t28874Z Brassica rapa HOM05D004030 ORTHO05D041112 1.9e-09 67.8 51 62.7
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 3.9e-07 60.1 89 44.9


User provided reference genes

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