Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 7.4e-103 377.1 175 100.0
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 6.2e-102 374.0 175 98.9
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 8.1e-102 373.6 175 98.9
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 8.1e-102 373.6 175 98.9
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 1.8e-101 372.5 175 98.9
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 4.0e-101 371.3 175 96.6
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 5.3e-101 370.9 175 96.6
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 6.9e-101 370.5 175 98.3
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 6.9e-101 370.5 175 97.7
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 9.0e-101 370.2 175 97.7
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 9.0e-101 370.2 175 97.7
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 9.0e-101 370.2 175 97.7
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 9.0e-101 370.2 175 97.7
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 9.0e-101 370.2 175 97.7
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 1.5e-100 369.4 175 97.1
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 2.0e-100 369.0 175 97.1
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 2.6e-100 368.6 175 97.1
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 2.6e-100 368.6 175 96.0
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 2.6e-100 368.6 175 96.0
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 2.6e-100 368.6 175 96.0
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 2.6e-100 368.6 175 95.4
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 4.5e-100 367.9 175 97.1
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 4.5e-100 367.9 175 97.1
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 4.5e-100 367.9 175 95.4
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 7.6e-100 367.1 175 97.1
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 1.0e-99 366.7 175 97.7
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 1.0e-99 366.7 175 94.9
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.7e-99 365.9 175 94.9
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 2.2e-99 365.5 175 93.7
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 2.2e-99 365.5 175 95.4
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 2.2e-99 365.5 175 94.3
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 2.2e-99 365.5 175 95.4
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.9e-99 365.2 175 94.3
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.9e-99 365.2 175 94.3
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 3.8e-99 364.8 175 94.9
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 4.9e-99 364.4 175 93.7
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 4.9e-99 364.4 175 94.3
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 4.9e-99 364.4 175 94.3
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 8.4e-99 363.6 175 94.9
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.1e-98 363.2 175 94.3
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 93.1
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 93.1
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 93.1
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 93.1
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 92.6
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 92.6
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 92.0
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 1.9e-98 362.5 175 93.7
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 1.9e-98 362.5 174 93.1
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 2.5e-98 362.1 175 92.0
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 2.5e-98 362.1 175 93.7
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 3.2e-98 361.7 175 94.3
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 3.2e-98 361.7 175 92.0
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 92.6
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 92.6
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 92.6
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 7.1e-98 360.5 175 92.6
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 93.1
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 9.3e-98 360.1 172 92.4
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 93.1
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 92.6
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 93.1
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 93.1
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 92.0
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.0
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 3.5e-97 358.2 174 92.5
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.6
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 92.6
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 92.6
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 4.6e-97 357.8 174 92.0
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 91.4
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 90.9
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 6.0e-97 357.5 177 92.7
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 6.0e-97 357.5 173 91.3
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 7.9e-97 357.1 174 89.7
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 92.0
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 90.9
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 90.9
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 91.4
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 90.9
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 91.4
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 91.4
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 91.4
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 2.3e-96 355.5 175 90.9
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 3.0e-96 355.1 174 93.7
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 3.0e-96 355.1 175 91.4
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 3.0e-96 355.1 172 91.3
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 6.7e-96 354.0 175 92.0
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 90.9
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 1.1e-95 353.2 173 92.5
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 90.9
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 90.9
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 90.3
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 2.5e-95 352.1 174 90.2
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 2.5e-95 352.1 174 90.2
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 5.7e-95 350.9 174 90.2
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 7.4e-95 350.5 174 92.0
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 9.6e-95 350.1 173 90.8
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 1.3e-94 349.7 175 89.7
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 3.7e-94 348.2 175 90.9
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 3.7e-94 348.2 169 90.5
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 4.8e-94 347.8 172 90.7
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 1.4e-93 346.3 175 88.6
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 1.8e-93 345.9 173 92.5
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 4.0e-93 344.7 175 86.3
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 9.0e-93 343.6 175 88.0
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 7.6e-92 340.5 175 88.6
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 5.5e-90 334.3 175 85.7
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 7.9e-89 330.5 175 82.9
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 8.7e-88 327.0 244 66.4
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 1.8e-85 319.3 173 82.7
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 1.2e-84 316.6 174 79.3
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 2.6e-84 315.5 174 78.2
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 4.2e-82 308.1 167 79.6
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 7.2e-82 307.4 150 90.0
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 1.8e-80 302.8 173 78.0
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 2.3e-80 302.4 181 80.1
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 3.7e-78 295.0 175 73.7
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 7.2e-74 280.8 165 71.5
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 2.7e-73 278.9 131 93.9
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 2.3e-72 275.8 167 79.6
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 1.1e-71 273.5 132 91.7
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 3.7e-70 268.5 131 88.5
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 2.9e-67 258.8 164 68.3
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 3.6e-65 251.9 125 91.2
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 1.6e-60 236.5 124 84.7
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 2.2e-59 232.6 112 92.0
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 1.6e-57 226.5 119 85.7
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 2.7e-57 225.7 125 82.4
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 1.7e-54 216.5 171 56.7
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.7e-54 216.5 114 86.0
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 1.0e-51 207.2 112 77.7
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 2.9e-51 205.7 104 88.5
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 1.8e-45 186.4 142 64.8
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 4.5e-44 181.8 95 86.3
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 1.4e-37 160.2 88 83.0
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 5.0e-35 151.8 177 49.7
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 6.2e-33 144.8 132 56.1
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 2.9e-30 136.0 114 61.4
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 9.2e-29 131.0 66 89.4
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 1.2e-23 114.0 115 49.6


User provided reference genes

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