Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2523 Capsella rubella HOM05D008071 ORTHO05D009954 2.5e-72 275.4 146 100.0
AL1G40040 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 1.8e-49 199.5 146 70.5
Carub.0001s2524 Capsella rubella HOM05D008071 ORTHO05D009954 1.0e-44 183.7 143 69.2
Thhalv10009029m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 8.7e-41 170.6 143 60.1
C02p24260 Brassica napus HOM05D008071 ORTHO05D009954 2.0e-37 159.5 144 55.6
BraA02t06549Z Brassica rapa HOM05D008071 ORTHO05D009954 2.0e-37 159.5 144 55.6
BcaC03g14931 Brassica carinata HOM05D008071 ORTHO05D009954 5.9e-37 157.9 144 54.9
BolC2t08535H Brassica oleracea HOM05D008071 ORTHO05D009954 5.9e-37 157.9 144 54.9
Sp5g23220 Schrenkiella parvula HOM05D008071 ORTHO05D009954 1.3e-36 156.8 144 54.2
A02p14820 Brassica napus HOM05D008071 ORTHO05D009954 1.7e-36 156.4 144 54.9
BcaB05g24356 Brassica carinata HOM05D008071 ORTHO05D009954 1.4e-35 153.3 141 53.2
Aa31LG7G9180 Aethionema arabicum HOM05D008071 ORTHO05D009954 2.5e-35 152.5 146 54.1
THA.LOC104827706 Tarenaya hassleriana HOM05D008071 ORTHO05D009954 1.6e-34 149.8 144 50.7
AT5G05020 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 1.2e-29 133.7 150 47.3
A07p31290 Brassica napus HOM05D008071 ORTHO05D009954 5.9e-29 131.3 143 46.2
BraA07t30762Z Brassica rapa HOM05D008071 ORTHO05D009954 5.9e-29 131.3 143 46.2
CARHR026190 Cardamine hirsuta HOM05D008071 ORTHO05D009954 1.7e-28 129.8 145 46.2
THA.LOC104827708 Tarenaya hassleriana HOM05D008071 ORTHO05D009954 8.5e-28 127.5 147 45.6
Carub.0006s3123 Capsella rubella HOM05D008071 ORTHO05D009954 1.9e-27 126.3 147 47.6
BcaC01g01683 Brassica carinata HOM05D008071 ORTHO05D009954 7.2e-27 124.4 141 41.8
BolC3t19602H Brassica oleracea HOM05D008071 ORTHO05D009954 7.2e-27 124.4 141 41.8
Sp1g22940 Schrenkiella parvula HOM05D008071 ORTHO05D009954 1.6e-26 123.2 144 43.1
AT2G41390 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 4.7e-26 121.7 147 46.3
Sp2g26770 Schrenkiella parvula HOM05D008071 ORTHO05D009954 7.9e-26 120.9 126 54.0
C03p73050 Brassica napus HOM05D008071 ORTHO05D009954 1.0e-25 120.6 141 41.1
BraA08t34634Z Brassica rapa HOM05D008071 ORTHO05D009954 1.4e-25 120.2 141 40.4
AL4G39460 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 1.1e-24 117.1 145 44.8
A04p31550 Brassica napus HOM05D008071 ORTHO05D009954 3.3e-24 115.5 144 45.1
BolC4t28398H Brassica oleracea HOM05D008071 ORTHO05D009954 3.3e-24 115.5 144 45.8
BraA04t18611Z Brassica rapa HOM05D008071 ORTHO05D009954 3.3e-24 115.5 144 45.1
BcaC02g12899 Brassica carinata HOM05D008071 ORTHO05D009954 5.7e-24 114.8 144 44.4
Carub.0001s2525 Capsella rubella HOM05D008071 ORTHO05D009954 2.8e-23 112.5 144 44.4
C04p68980 Brassica napus HOM05D008071 ORTHO05D009954 6.3e-23 111.3 144 44.4
AT2G41400 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 1.4e-22 110.2 147 44.2
CARHR026210 Cardamine hirsuta HOM05D008071 ORTHO05D009954 2.4e-22 109.4 145 42.8
BcaB03g15516 Brassica carinata HOM05D008071 ORTHO05D009954 3.4e-21 105.5 143 42.0
BcaB03g12034 Brassica carinata HOM05D008071 ORTHO05D009954 6.5e-20 101.3 139 40.3
CARHR136500 Cardamine hirsuta HOM05D008071 ORTHO05D009954 1.1e-19 100.5 145 40.0
A07p12520 Brassica napus HOM05D008071 ORTHO05D009954 1.9e-19 99.8 143 43.4
BcaC08g45854 Brassica carinata HOM05D008071 ORTHO05D009954 8.0e-18 94.4 143 42.0
BolC3t19605H Brassica oleracea HOM05D008071 ORTHO05D009954 6.7e-17 91.3 138 39.1
BcaB03g14033 Brassica carinata HOM05D008071 ORTHO05D009954 1.5e-16 90.1 131 41.2
C03p73100 Brassica napus HOM05D008071 ORTHO05D009954 1.5e-16 90.1 138 39.1
BcaB03g12032 Brassica carinata HOM05D008071 ORTHO05D009954 2.0e-16 89.7 139 37.4
BcaB03g14030 Brassica carinata HOM05D008071 ORTHO05D009954 4.4e-16 88.6 126 42.1
A08p26850 Brassica napus HOM05D008071 ORTHO05D009954 7.4e-16 87.8 139 38.8
Rhsim03G0040600 Rhododendron simsii HOM05D008071 ORTHO05D009954 1.7e-15 86.7 127 34.6
Nitab4.5_0000123g0160 Nicotiana tabacum HOM05D013183 ORTHO05D009954 6.3e-15 84.7 141 34.0
Nitab4.5_0006448g0040 Nicotiana tabacum HOM05D013183 ORTHO05D009954 1.4e-14 83.6 140 34.3
BraA07t29031Z Brassica rapa HOM05D008071 ORTHO05D009954 7.0e-14 81.3 130 40.8
Thhalv10009039m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 7.0e-14 81.3 144 34.7
A09p39180 Brassica napus HOM05D008071 ORTHO05D009954 2.6e-13 79.3 129 35.7
BraA09t39418Z Brassica rapa HOM05D008071 ORTHO05D009954 2.6e-13 79.3 129 35.7
C05p25190 Brassica napus HOM05D008071 ORTHO05D009954 7.7e-13 77.8 129 34.1
AL2G27010 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 2.9e-12 75.9 79 48.1
QL07p015274 Quercus lobata HOM05D008071 ORTHO05D009954 1.5e-11 73.6 140 32.1
Eucgr.K01698 Eucalyptus grandis HOM05D008071 ORTHO05D009954 1.9e-11 73.2 140 32.9
Dinv06965 Davidia involucrata HOM05D008071 ORTHO05D009954 2.5e-11 72.8 120 34.2
Nitab4.5_0000123g0140 Nicotiana tabacum HOM05D031502 ORTHO05D009954 2.5e-11 72.8 151 32.5
Eucgr.K01697 Eucalyptus grandis HOM05D008071 ORTHO05D009954 4.7e-10 68.6 140 31.4
BcaC06g35221 Brassica carinata HOM05D008071 ORTHO05D009954 6.1e-10 68.2 95 41.1
C07p18520 Brassica napus HOM05D008071 ORTHO05D009954 6.1e-10 68.2 95 41.1
BolC7t42363H Brassica oleracea HOM05D008071 ORTHO05D009954 1.4e-09 67.0 95 40.0
Nitab4.5_0006448g0020 Nicotiana tabacum HOM05D031502 ORTHO05D009954 4.0e-09 65.5 148 31.8
Thhalv10009714m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 1.5e-08 63.5 77 49.4
DCAR_008209 Daucus carota HOM05D014896 ORTHO05D016270 2.0e-08 63.2 155 32.3
ATR0006G003 Amborella trichopoda HOM05D008071 ORTHO05D009954 9.7e-08 60.8 124 32.3
Sopen09g028540 Solanum pennellii HOM05D013183 ORTHO05D018130 1.7e-07 60.1 101 34.7
BcaC05g26476 Brassica carinata HOM05D008071 ORTHO05D009954 2.2e-07 59.7 88 40.9
Solyc09g072770.1 Solanum lycopersicum HOM05D013183 ORTHO05D018130 2.2e-07 59.7 110 31.8
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 2.8e-07 59.3 115 35.7
BcaB03g12033 Brassica carinata HOM05D008071 ORTHO05D009954 4.8e-07 58.5 63 47.6
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.8e-07 58.5 108 38.0
DCAR_008212 Daucus carota HOM05D014896 ORTHO05D016270 6.3e-07 58.2 120 32.5
Dinv13279 Davidia involucrata HOM05D008071 ORTHO05D009954 6.3e-07 58.2 146 28.8
PGR142G3345 Punica granatum HOM05D008071 ORTHO05D009954 8.2e-07 57.8 143 29.4
DCAR_008211 Daucus carota HOM05D014896 ORTHO05D016270 2.4e-06 56.2 138 33.3
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.1e-06 55.8 133 31.6
DCAR_008214 Daucus carota HOM05D014896 ORTHO05D016270 4.1e-06 55.5 156 34.0
DCAR_008215 Daucus carota HOM05D014896 ORTHO05D016270 4.1e-06 55.5 121 31.4


User provided reference genes

Program Settings