Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2488 Capsella rubella HOM05D006903 ORTHO05D008655 5.7e-256 887.1 457 100.0
AT1G26090 Arabidopsis thaliana HOM05D006903 ORTHO05D008655 3.2e-230 801.6 457 91.2
AL1G39690 Arabidopsis lyrata HOM05D006903 ORTHO05D008655 4.0e-225 784.6 457 89.3
CARHR025840 Cardamine hirsuta HOM05D006903 ORTHO05D008655 8.4e-215 750.4 457 85.3
Thhalv10007585m.g Eutrema salsugineum HOM05D006903 ORTHO05D008655 3.3e-211 738.4 461 84.6
Sp1g22600 Schrenkiella parvula HOM05D006903 ORTHO05D008655 1.6e-210 736.1 461 83.5
BraA08t34657Z Brassica rapa HOM05D006903 ORTHO05D008655 1.9e-206 722.6 460 84.6
A08p27120 Brassica napus HOM05D006903 ORTHO05D008655 1.6e-205 719.5 460 84.1
C03p72740 Brassica napus HOM05D006903 ORTHO05D008655 1.4e-201 706.4 459 83.4
BolC3t19572H Brassica oleracea HOM05D006903 ORTHO05D008655 2.4e-201 705.7 459 83.4
BcaB03g12083 Brassica carinata HOM05D006903 ORTHO05D008655 5.3e-193 677.9 463 79.7
Aa31LG7G8910 Aethionema arabicum HOM05D006903 ORTHO05D008655 1.5e-192 676.4 463 77.8
MD13G1047700 Malus domestica HOM05D006903 ORTHO05D008655 1.4e-148 530.4 422 64.0
Haze_17427 Corylus avellana HOM05D006903 ORTHO05D008655 4.5e-144 515.4 437 61.3
Haze_17428 Corylus avellana HOM05D006903 ORTHO05D008655 4.5e-144 515.4 437 61.3
CSS0045037 Camellia sinensis var. sinensis HOM05D006903 ORTHO05D008655 1.3e-143 513.8 413 63.2
Sopen05g005730 Solanum pennellii HOM05D006903 ORTHO05D008655 2.2e-143 513.1 439 60.6
Peaxi162Scf00367g00739 Petunia axillaris HOM05D006903 ORTHO05D008655 5.0e-143 511.9 413 63.4
Prupe.1G304300 Prunus persica HOM05D006903 ORTHO05D008655 1.5e-142 510.4 433 61.2
QL01p001027 Quercus lobata HOM05D006903 ORTHO05D008655 1.5e-142 510.4 434 59.7
RcHm_v2.0_Chr4g0435961 Rosa chinensis HOM05D006903 ORTHO05D008655 3.2e-142 509.2 454 57.9
Cpa.g.sc1.226 Carica papaya HOM05D006903 ORTHO05D008655 4.2e-142 508.8 456 60.1
Rhsim09G0113100 Rhododendron simsii HOM05D006903 ORTHO05D008655 1.2e-141 507.3 405 62.5
FAN12G3275 Fragaria x ananassa HOM05D006903 ORTHO05D008655 2.3e-140 503.1 463 57.2
Dinv16514 Davidia involucrata HOM05D006903 ORTHO05D008655 3.0e-140 502.7 409 62.3
FvH4_4g28200 Fragaria vesca HOM05D006903 ORTHO05D008655 8.8e-140 501.1 463 57.2
CAN.G184.79 Capsicum annuum HOM05D006903 ORTHO05D008655 1.5e-139 500.4 414 62.6
Migut.E00291 Erythranthe guttata HOM05D006903 ORTHO05D008655 1.5e-139 500.4 404 62.4
Medtr5g053280 Medicago truncatula HOM05D006903 ORTHO05D008655 2.0e-139 500.0 430 60.2
Nitab4.5_0005803g0010 Nicotiana tabacum HOM05D006903 ORTHO05D008655 2.6e-139 499.6 465 57.8
Actinidia14845 Actinidia chinensis HOM05D006903 ORTHO05D008655 4.4e-139 498.8 429 59.2
Duzib248G0677 Durio zibethinus HOM05D006903 ORTHO05D008655 7.5e-139 498.0 456 58.8
Lsat_1_v5_gn_3_58300 Lactuca sativa HOM05D006903 ORTHO05D008655 7.5e-139 498.0 421 62.7
Glyma.02G101000 Glycine max HOM05D006903 ORTHO05D008655 9.8e-139 497.7 400 63.0
Ca_26576_v3 Cicer arietinum L. HOM05D006903 ORTHO05D008655 1.7e-138 496.9 432 59.5
Lj2g0014822 Lotus japonicus HOM05D006903 ORTHO05D008655 3.7e-138 495.7 405 62.0
CANSAT64G1629 Cannabis sativa HOM05D006903 ORTHO05D008655 1.1e-137 494.2 435 58.9
FAN22G1870 Fragaria x ananassa HOM05D006903 ORTHO05D008655 1.1e-137 494.2 463 56.6
Sed0022387 Sechium edule HOM05D006903 ORTHO05D008655 1.1e-137 494.2 459 58.0
Hund05771 Selenicereus undatus HOM05D006903 ORTHO05D008655 1.6e-136 490.3 406 60.1
GSVIVG01011964001 Vitis vinifera HOM05D006903 ORTHO05D008655 2.0e-136 490.0 411 60.3
Gorai.005G137600 Gossypium raimondii HOM05D006903 ORTHO05D008655 3.5e-136 489.2 455 58.7
CsaV3_5G033920 Cucumis sativus L. HOM05D006903 ORTHO05D008655 4.5e-136 488.8 458 58.3
Oeu044621.1 Olea europaea HOM05D006903 ORTHO05D008655 5.9e-136 488.4 442 58.1
Lj3C1020T9 Lonicera japonica HOM05D006903 ORTHO05D008655 1.0e-135 487.6 402 61.2
FAN17G3035 Fragaria x ananassa HOM05D006903 ORTHO05D008655 1.7e-135 486.9 408 60.3
HanXRQChr15g0476011 Helianthus annuus HOM05D006903 ORTHO05D008655 5.0e-135 485.3 410 61.0
Lalb_Chr04g0254991 Lupinus albus HOM05D006903 ORTHO05D008655 5.0e-135 485.3 404 61.4
Phvul.003G026200 Phaseolus vulgaris HOM05D006903 ORTHO05D008655 1.9e-134 483.4 449 57.5
PGR119G0052 Punica granatum HOM05D006903 ORTHO05D008655 3.2e-134 482.6 404 61.6
DCAR_030091 Daucus carota HOM05D006903 ORTHO05D008655 7.2e-134 481.5 402 61.7
CiPaw.16G002500 Carya illinoinensis HOM05D006903 ORTHO05D008655 2.1e-133 479.9 397 62.7
Sabra10G0099600 Salix brachista HOM05D006903 ORTHO05D008655 4.7e-133 478.8 465 56.8
Eucgr.G02357 Eucalyptus grandis HOM05D006903 ORTHO05D008655 3.0e-132 476.1 458 56.3
VMungo1215G2648 Vigna mungo HOM05D006903 ORTHO05D008655 6.8e-132 474.9 405 60.2
Potri.010G130700 Populus trichocarpa HOM05D006903 ORTHO05D008655 2.0e-131 473.4 416 59.9
SalBow8G1412 Salvia bowleyana HOM05D006903 ORTHO05D008655 5.7e-131 471.9 405 60.7
arahy.Tifrunner.gnm1.ann1.9PC4TR Arachis hypogaea HOM05D006903 ORTHO05D008655 1.7e-130 470.3 454 55.7
TPR.G22411 Trifolium pratense HOM05D006903 ORTHO05D008655 2.2e-130 469.9 380 62.9
AUR62002930 Chenopodium quinoa HOM05D006903 ORTHO05D008655 1.1e-129 467.6 450 56.4
EL10Ac6g14516 Beta vulgaris HOM05D006903 ORTHO05D008655 2.4e-129 466.5 411 59.9
arahy.Tifrunner.gnm1.ann1.RDH5GK Arachis hypogaea HOM05D006903 ORTHO05D008655 3.1e-129 466.1 454 55.3
Nn3g17696 Nelumbo nucifera HOM05D006903 ORTHO05D008655 4.1e-129 465.7 465 54.2
Sc04g0006770 Simmondsia chinensis HOM05D006903 ORTHO05D008655 5.4e-129 465.3 437 55.4
FAN07G2589 Fragaria x ananassa HOM05D006903 ORTHO05D008655 7.0e-129 464.9 463 54.6
Nitab4.5_0004705g0010 Nicotiana tabacum HOM05D006903 ORTHO05D008655 7.0e-129 464.9 464 55.0
Cc11_g10700 Coffea canephora HOM05D006903 ORTHO05D008655 1.2e-128 464.2 407 57.2
PSO478G5279 Papaver somniferum HOM05D006903 ORTHO05D008655 1.2e-128 464.2 420 57.4
ClCG05G023070 Citrullus lanatus HOM05D006903 ORTHO05D008655 3.3e-126 456.1 467 54.0
COL.COLO4_07859 Corchorus olitorius HOM05D006903 ORTHO05D008655 9.5e-126 454.5 435 55.4
MELO3C012210.2 Cucumis melo HOM05D006903 ORTHO05D008655 9.5e-126 454.5 431 57.5
Aqoxy3G00382 Aquilegia oxysepala HOM05D006903 ORTHO05D008655 2.8e-125 453.0 408 58.6
PGSC0003DMG400000822 Solanum tuberosum HOM05D006903 ORTHO05D008655 6.1e-125 451.8 377 60.7
ECA246G0069 Erigeron canadensis HOM05D006903 ORTHO05D008655 1.0e-124 451.1 377 62.1
MBI10_g08549_MAGBIO Magnolia biondii HOM05D006903 ORTHO05D008655 1.8e-124 450.3 410 57.3
ATR0053G028 Amborella trichopoda HOM05D006903 ORTHO05D008655 1.1e-121 441.0 412 59.2
TWI31G1007 Tripterygium wilfordii HOM05D006903 ORTHO05D008655 2.7e-120 436.4 360 63.3
Cfa018642 Carpinus fangiana HOM05D006903 ORTHO05D008655 3.9e-119 432.6 437 54.2
Ciclev10033640m.g Citrus clementina HOM05D006903 ORTHO05D008655 5.6e-118 428.7 404 55.4
unitig_62.g23710 Utricularia gibba HOM05D006903 ORTHO05D008655 8.0e-117 424.9 481 51.1
Atru.chr11.1372 Acer truncatum HOM05D006903 ORTHO05D008655 1.7e-111 407.1 331 62.2
PSO017G3486 Papaver somniferum HOM05D006903 ORTHO05D008655 7.5e-107 391.7 358 57.0
Zm00001eb252440 Zea mays HOM05D006903 ORTHO05D008655 1.3e-106 391.0 398 52.5
Psat0s629g0200 Pisum sativum HOM05D006903 ORTHO05D008655 1.7e-106 390.6 329 59.3
Manes.06G073100 Manihot esculenta HOM05D006903 ORTHO05D008655 2.2e-106 390.2 333 61.9
AUR62007740 Chenopodium quinoa HOM05D006903 ORTHO05D008655 3.9e-103 379.4 445 48.3
SGA_v2.0_scaffold14G06815 Striga asiatica HOM05D006903 ORTHO05D008655 1.1e-100 371.3 335 56.7
AagrBONN_evm.TU.Sc2ySwM_117.1113 Anthoceros agrestis HOM05D006903 ORTHO05D008655 3.0e-95 353.2 409 47.2
Ah.03g137980 Amaranthus hybridus HOM05D006903 ORTHO05D008655 9.6e-94 348.2 396 49.0
Gohir.D02G116200 Gossypium hirsutum HOM05D006903 ORTHO05D008655 9.6e-94 348.2 269 65.4
Gohir.A03G097100 Gossypium hirsutum HOM05D006903 ORTHO05D008655 1.2e-93 347.8 310 60.3
Hma1.2p1_0406F.1_g145980 Hydrangea macrophylla HOM05D006903 ORTHO05D008655 1.6e-93 347.4 292 59.2
Pp3c6_9390 Physcomitrium patens HOM05D006903 ORTHO05D008655 7.6e-91 338.6 448 44.0
Thecc.02G362300 Theobroma cacao HOM05D006903 ORTHO05D008655 9.9e-91 338.2 295 58.0
SEGI_13133 Sequoiadendron giganteum HOM05D006903 ORTHO05D008655 2.9e-90 336.7 368 49.7
Mapoly0088s0003 Marchantia polymorpha HOM05D006903 ORTHO05D008655 6.0e-88 328.9 404 46.0
vmacro10523 Vaccinium macrocarpon HOM05D006903 ORTHO05D008655 7.3e-86 322.0 379 47.5
TAR629G3475 Trochodendron aralioides HOM05D006903 ORTHO05D008655 2.1e-85 320.5 295 54.2
Solyc05g009920.4 Solanum lycopersicum HOM05D006903 ORTHO05D008655 3.6e-85 319.7 270 60.4
SMO367G1048 Selaginella moellendorffii HOM05D006903 ORTHO05D008655 1.3e-82 311.2 412 45.1
HanXRQChr00c0584g0576181 Helianthus annuus HOM05D006903 ORTHO05D008655 6.4e-82 308.9 231 65.4
SEGI_18137 Sequoiadendron giganteum HOM05D006903 ORTHO05D008655 3.0e-79 300.1 335 49.3
HPP92_003072 Vanilla planifolia HOM05D006903 ORTHO05D008655 3.9e-55 219.9 255 49.4
Os02g0711200 Oryza sativa ssp. japonica HOM05D006903 ORTHO05D008655 1.1e-46 191.8 162 61.7
GSVIVG01021676001 Vitis vinifera HOM05D006903 ORTHO05D008655 9.7e-46 188.7 140 67.9
CSS0042654 Camellia sinensis var. sinensis HOM05D006903 ORTHO05D008655 3.9e-39 166.8 147 60.5
HPP92_003073 Vanilla planifolia HOM05D006903 ORTHO05D008655 3.7e-37 160.2 170 51.2
Glyma.01G089202 Glycine max HOM05D006903 ORTHO05D008655 1.3e-29 135.2 145 44.8
GSVIVG01031030001 Vitis vinifera HOM05D006903 ORTHO05D008655 3.7e-29 133.7 105 63.8
Potri.008G115401 Populus trichocarpa HOM05D006903 ORTHO05D008655 4.8e-29 133.3 155 47.7
HanXRQChr00c0584g0576191 Helianthus annuus HOM05D006903 ORTHO05D008655 2.7e-27 127.5 108 54.6
TAR626G1973 Trochodendron aralioides HOM05D006903 ORTHO05D008655 7.2e-25 119.4 91 63.7
CSS0002023 Camellia sinensis var. sinensis HOM05D006903 ORTHO05D008655 6.1e-24 116.3 122 57.4
GSVIVG01021677001 Vitis vinifera HOM05D006903 ORTHO05D008655 7.5e-22 109.4 96 52.1
TAR629G0855 Trochodendron aralioides HOM05D006903 ORTHO05D008655 2.8e-21 107.5 93 60.2


User provided reference genes

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