Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 2.2e-67 258.8 133 100.0
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 4.8e-62 241.1 133 93.2
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 6.3e-62 240.7 133 91.7
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 4.2e-58 228.0 133 89.5
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 2.7e-57 225.3 133 88.0
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 3.6e-57 224.9 134 88.8
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 4.6e-57 224.6 139 85.6
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.4e-56 223.0 147 84.4
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 2.5e-55 218.8 139 82.7
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 5.7e-55 217.6 143 84.6
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 7.4e-55 217.2 134 85.8
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 2.2e-54 215.7 141 85.1
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 4.8e-54 214.5 137 83.9
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 1.8e-53 212.6 113 96.5
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 4.5e-52 208.0 147 78.2
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 7.7e-52 207.2 125 84.0
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.9e-51 205.3 130 82.3
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 3.8e-51 204.9 127 82.7
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.1e-50 203.4 130 80.8
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 2.5e-50 202.2 131 78.6
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 2.5e-50 202.2 129 80.6
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 4.2e-50 201.4 127 80.3
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 5.5e-50 201.1 121 83.5
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.6e-49 199.5 122 81.1
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.6e-49 199.5 122 81.1
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 1.6e-49 199.5 122 81.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 2.7e-49 198.7 129 77.5
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 7.9e-49 197.2 137 75.9
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.0e-48 196.8 129 77.5
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 2.3e-48 195.7 115 85.2
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.3e-48 195.7 127 78.0
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 3.0e-48 195.3 125 79.2
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 3.0e-48 195.3 130 76.9
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 3.9e-48 194.9 125 78.4
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 3.9e-48 194.9 132 76.5
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 3.9e-48 194.9 117 83.8
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 5.1e-48 194.5 126 78.6
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 8.8e-48 193.7 115 83.5
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.5e-47 193.0 125 77.6
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 2.0e-47 192.6 125 75.2
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 2.6e-47 192.2 118 78.8
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 4.4e-47 191.4 127 76.4
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.3e-46 189.9 125 78.4
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 1.3e-46 189.9 127 76.4
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.7e-46 189.5 121 76.9
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.7e-46 189.5 130 73.8
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 2.2e-46 189.1 113 79.6
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 8.2e-46 187.2 138 71.7
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 8.2e-46 187.2 138 71.7
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 8.2e-46 187.2 122 79.5
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 1.1e-45 186.8 138 78.3
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 1.1e-45 186.8 149 66.4
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 1.1e-45 186.8 149 66.4
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.4e-45 186.4 125 73.6
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 2.4e-45 185.7 133 72.9
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 4.1e-45 184.9 127 76.4
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 4.1e-45 184.9 130 74.6
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 5.3e-45 184.5 123 74.8
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 5.3e-45 184.5 120 78.3
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 7.0e-45 184.1 133 72.2
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 2.9e-43 178.7 133 70.7
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 3.8e-43 178.3 115 76.5
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 3.8e-43 178.3 115 78.3
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 5.0e-43 177.9 117 73.5
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 8.5e-43 177.2 118 76.3
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 1.4e-42 176.4 122 76.2
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.4e-42 176.4 120 75.0
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 4.2e-42 174.9 131 69.5
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 1.2e-41 173.3 115 75.7
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 1.2e-41 173.3 120 74.2
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.2e-41 173.3 125 73.6
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.6e-41 172.9 120 74.2
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 2.1e-41 172.6 113 77.0
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 2.1e-41 172.6 114 78.1
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 6.1e-41 171.0 120 75.8
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 1.0e-40 170.2 115 72.2
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.4e-40 169.9 123 71.5
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 2.3e-40 169.1 120 72.5
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 8.8e-40 167.2 158 58.9
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.5e-39 166.4 112 79.5
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.6e-39 165.6 122 69.7
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 2.6e-39 165.6 117 72.6
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 5.7e-39 164.5 112 78.6
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 5.7e-39 164.5 122 68.9
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.3e-38 163.3 122 68.0
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 3.7e-38 161.8 123 74.0
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 4.8e-38 161.4 117 67.5
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 8.2e-38 160.6 115 69.6
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 2.4e-37 159.1 179 52.0
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 3.1e-37 158.7 114 69.3
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 4.1e-37 158.3 139 64.0
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 9.1e-37 157.1 100 82.0
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 9.1e-37 157.1 115 73.9
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 1.2e-36 156.8 127 63.0
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 4.5e-36 154.8 146 56.8
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.7e-36 154.1 115 73.0
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 1.3e-35 153.3 118 65.3
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.3e-35 153.3 118 65.3
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 3.8e-35 151.8 117 66.7
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 5.0e-35 151.4 129 64.3
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 8.5e-35 150.6 113 72.6
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 5.5e-34 147.9 125 62.4
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 9.4e-34 147.1 121 63.6
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 1.4e-32 143.3 124 62.9
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 2.3e-32 142.5 90 76.7
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.3e-32 142.5 128 64.1
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 3.0e-32 142.1 170 52.4
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 2.6e-31 139.0 127 55.9
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 5.7e-31 137.9 88 73.9
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 1.7e-30 136.3 129 59.7
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 3.7e-30 135.2 129 59.7
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 6.3e-30 134.4 124 57.3
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 4.1e-29 131.7 85 75.3
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 5.9e-28 127.9 106 58.5
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 2.9e-27 125.6 117 59.8
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 3.2e-26 122.1 84 71.4
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 4.2e-26 121.7 105 55.2
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 5.5e-26 121.3 106 56.6
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.6e-25 119.8 179 43.0
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 4.7e-25 118.2 83 74.7
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 1.8e-24 116.3 70 78.6
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.0e-24 115.5 106 62.3
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 2.0e-23 112.8 69 76.8
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 1.3e-22 110.2 70 72.9
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 1.5e-18 96.7 83 66.3
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 8.0e-17 90.9 49 89.8
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 4.0e-16 88.6 60 68.3
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 9.2e-13 77.4 66 50.0
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 2.5e-10 69.3 48 68.8
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 3.1e-08 62.4 46 69.6
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 4.0e-08 62.0 54 64.8


User provided reference genes

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