Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.3e-149 533.1 278 100.0
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 2.3e-143 512.3 277 95.3
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.2e-141 505.8 277 93.5
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 4.3e-137 491.5 277 89.2
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 8.0e-136 487.3 277 90.6
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 3.0e-135 485.3 277 88.4
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 3.0e-135 485.3 277 88.4
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 3.0e-135 485.3 277 88.4
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 8.9e-135 483.8 277 88.1
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 2.0e-134 482.6 277 87.7
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 2.0e-134 482.6 277 87.7
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 2.0e-134 482.6 277 87.7
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 3.4e-134 481.9 277 87.7
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 8.3e-133 477.2 277 87.4
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 8.3e-133 477.2 277 87.0
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.4e-132 475.7 277 87.4
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 7.8e-131 470.7 277 85.2
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 5.0e-130 468.0 283 85.2
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 3.3e-121 438.7 277 80.5
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 2.7e-107 392.5 278 74.1
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.5e-105 386.0 251 81.7
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.8e-103 379.8 276 70.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.3e-103 378.3 278 70.5
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.5e-102 376.7 278 70.1
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.5e-102 376.7 277 70.8
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.0e-102 376.3 278 69.8
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.6e-102 374.4 278 69.4
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 7.6e-102 374.4 276 69.6
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.3e-101 373.6 276 69.2
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 2.9e-101 372.5 278 69.4
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 4.9e-101 371.7 276 68.8
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.9e-100 369.8 276 68.8
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 4.2e-100 368.6 277 69.0
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.6e-99 366.7 281 67.6
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.6e-99 366.7 276 67.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 2.7e-99 365.9 277 66.8
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 7.8e-99 364.4 278 67.6
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 7.8e-99 364.4 277 69.7
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.0e-98 364.0 278 67.6
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.3e-98 363.6 277 68.2
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.3e-98 363.6 279 67.7
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.7e-98 363.2 278 68.3
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 3.0e-98 362.5 278 69.8
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 3.0e-98 362.5 277 67.9
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.9e-97 359.8 276 66.7
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 7.3e-97 357.8 276 67.8
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 7.3e-97 357.8 277 68.2
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.3e-96 357.1 277 67.9
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.6e-96 356.7 277 67.9
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.6e-96 356.7 278 69.8
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 2.8e-96 355.9 277 66.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.6e-96 355.5 276 67.8
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 3.6e-96 355.5 277 67.1
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 4.8e-96 355.1 276 66.3
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 6.2e-96 354.8 278 68.3
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 8.1e-96 354.4 280 65.7
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 8.1e-96 354.4 276 67.4
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 8.1e-96 354.4 257 71.6
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.1e-95 354.0 278 69.1
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.4e-95 352.8 280 66.1
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 3.1e-95 352.4 245 73.5
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 4.0e-95 352.1 279 65.9
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.0e-95 352.1 277 67.9
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.3e-95 351.7 278 68.3
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 5.3e-95 351.7 277 66.8
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 5.3e-95 351.7 285 66.7
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 6.9e-95 351.3 276 65.6
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 9.0e-95 350.9 280 65.7
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 1.5e-94 350.1 278 67.3
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 2.6e-94 349.4 281 66.9
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 9.9e-94 347.4 279 67.4
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 2.2e-93 346.3 277 66.1
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 2.9e-93 345.9 284 63.7
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 4.9e-93 345.1 283 64.0
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 6.4e-93 344.7 283 65.0
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 8.4e-93 344.4 278 65.8
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 8.4e-93 344.4 279 64.5
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 8.4e-93 344.4 283 63.3
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 1.9e-92 343.2 287 62.7
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.4e-92 342.8 271 67.5
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.4e-92 342.8 283 64.3
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 5.4e-92 341.7 244 72.1
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 7.1e-92 341.3 271 67.9
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 9.3e-92 340.9 276 65.2
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.6e-91 340.1 278 64.7
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.6e-91 340.1 227 74.9
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.1e-91 339.7 290 63.4
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.7e-91 339.3 243 72.0
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 2.7e-91 339.3 283 61.8
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 6.0e-91 338.2 310 61.0
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.9e-90 335.5 288 64.6
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 6.7e-90 334.7 280 65.0
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.9e-89 333.2 226 72.6
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 5.6e-89 331.6 278 64.0
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 9.6e-89 330.9 226 72.1
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.1e-87 327.4 279 65.6
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.4e-87 326.2 282 62.1
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 5.3e-87 325.1 271 63.1
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 6.9e-87 324.7 275 62.2
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 9.0e-87 324.3 280 61.8
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.5e-86 323.6 246 68.3
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.6e-86 322.8 216 74.5
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 1.3e-85 320.5 278 62.9
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 2.2e-85 319.7 274 62.4
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 8.4e-85 317.8 252 66.3
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 3.2e-84 315.8 278 62.6
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.5e-83 312.4 282 59.6
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 6.7e-82 308.1 276 61.2
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 8.7e-82 307.8 283 60.1
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 9.6e-81 304.3 228 68.0
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.8e-79 300.1 275 60.4
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 3.4e-78 295.8 277 59.2
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 6.5e-77 291.6 226 65.9
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.9e-76 290.0 226 65.5
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 7.1e-76 288.1 245 58.8
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.2e-75 287.3 241 62.7
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 5.7e-73 278.5 286 56.6
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.8e-71 273.5 208 68.3
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 2.6e-70 269.6 292 48.3
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.9e-69 266.2 293 50.2
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.1e-68 264.2 262 51.9
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 5.5e-68 261.9 214 61.2
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-60 237.3 197 54.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.5e-60 235.3 197 54.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-59 233.8 197 53.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.6e-59 232.6 197 53.8
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-56 223.8 210 58.6
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 3.2e-52 209.5 270 47.8
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.0e-51 204.9 150 67.3
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.4e-49 199.1 154 66.9
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.3e-48 195.3 211 53.1
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.3e-48 195.3 197 47.7
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.1e-47 192.6 137 71.5
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 9.1e-47 191.4 245 49.4
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.9e-45 186.4 224 49.1
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.9e-37 159.8 171 52.0
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 2.7e-35 153.3 100 78.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 2.7e-35 153.3 100 78.0
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-34 149.1 183 43.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-30 137.5 182 39.6
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-28 131.0 199 35.7
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.8e-27 126.7 83 75.9
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.8e-27 126.7 118 55.9
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.8e-26 124.0 225 36.0
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 2.2e-24 117.1 76 73.7
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 2.8e-24 116.7 217 33.2
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.4e-23 112.5 206 39.8
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.3e-21 107.1 190 41.1
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 4.0e-18 96.3 51 86.3
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.5e-17 94.4 67 65.7
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.8e-17 92.4 65 64.6
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.5e-17 92.0 65 64.6
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 9.8e-17 91.7 91 47.3
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.3e-16 88.6 60 66.7
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.6e-14 82.8 66 62.1
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 6.0e-14 82.4 92 51.1
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 3.0e-13 80.1 59 72.9
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 3.0e-13 80.1 59 72.9
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 3.3e-12 76.6 61 67.2
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.1e-11 73.9 53 64.2
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 5.8e-09 65.9 44 77.3
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 1.7e-08 64.3 46 71.7


User provided reference genes

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