Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 6.8e-184 647.1 312 100.0
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.9e-150 535.4 311 84.6
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.2e-142 509.2 313 79.6
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.4e-142 507.3 313 77.6
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.6e-140 503.1 310 79.4
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 8.7e-139 497.3 313 77.6
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.6e-137 493.0 310 76.5
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-137 493.0 313 77.3
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.8e-137 492.3 310 75.8
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.2e-137 491.1 313 77.6
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 1.4e-136 490.0 310 76.1
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.1e-136 488.8 313 75.7
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 5.8e-135 484.6 310 75.5
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.0e-134 483.8 310 75.8
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.0e-134 483.8 313 76.4
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 2.9e-134 482.3 310 75.2
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.9e-133 479.6 313 74.1
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 3.2e-133 478.8 313 72.8
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 7.1e-133 477.6 313 72.8
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 7.1e-133 477.6 313 72.8
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 9.3e-133 477.2 313 73.8
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-132 476.5 301 77.1
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-131 473.8 310 73.2
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.3e-131 472.6 313 72.5
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.1e-131 471.5 313 72.5
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 1.9e-130 469.5 306 72.9
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-129 466.1 300 74.7
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 8.2e-129 464.2 310 71.9
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 2.0e-127 459.5 313 71.2
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.9e-126 455.7 313 70.9
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.3e-125 450.7 284 75.7
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.3e-123 446.8 312 70.2
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 8.7e-123 444.1 311 68.5
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 8.7e-123 444.1 311 68.5
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.6e-121 439.9 306 70.3
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.0e-118 430.6 307 68.1
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-117 427.2 307 67.8
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 7.2e-117 424.5 313 69.0
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.0e-115 420.6 303 67.7
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 3.3e-114 415.6 311 67.2
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.4e-112 410.2 293 69.6
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-112 409.8 290 69.3
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.0e-110 404.1 307 65.5
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 2.1e-100 369.8 352 54.5
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 3.2e-93 345.9 207 81.2
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 3.2e-93 345.9 207 81.2
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 8.8e-91 337.8 252 65.5
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.0e-84 314.7 225 68.0
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 8.0e-84 314.7 308 47.4
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 1.0e-83 314.3 297 48.8
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.2e-82 310.8 308 49.0
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 3.4e-82 309.3 299 49.2
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 5.7e-82 308.5 294 50.7
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 1.7e-81 307.0 295 49.2
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 2.2e-81 306.6 294 49.0
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 2.2e-81 306.6 308 48.1
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 2.2e-81 306.6 294 48.3
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 2.8e-81 306.2 294 48.6
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 2.8e-81 306.2 302 49.0
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 2.8e-81 306.2 294 48.3
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 4.9e-81 305.4 302 47.4
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 6.3e-81 305.1 294 48.3
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 6.3e-81 305.1 300 47.7
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 8.3e-81 304.7 304 47.4
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 8.3e-81 304.7 297 47.8
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 8.3e-81 304.7 299 47.8
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 8.3e-81 304.7 300 48.7
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.1e-80 304.3 308 47.7
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.1e-80 304.3 302 47.7
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.1e-80 304.3 294 49.3
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.4e-80 303.9 294 49.0
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.8e-80 303.5 301 47.8
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 1.8e-80 303.5 302 48.0
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 2.4e-80 303.1 302 47.4
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 2.4e-80 303.1 302 47.4
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 2.4e-80 303.1 294 49.3
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 4.1e-80 302.4 283 49.5
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 7.0e-80 301.6 294 49.0
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 7.0e-80 301.6 302 48.0
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 9.2e-80 301.2 304 47.0
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 9.2e-80 301.2 294 49.3
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 9.2e-80 301.2 313 47.3
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.2e-79 300.8 294 46.9
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 1.2e-79 300.8 294 46.6
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 1.6e-79 300.4 302 47.7
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 2.0e-79 300.1 302 48.3
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 2.0e-79 300.1 294 47.6
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 2.7e-79 299.7 302 46.4
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 4.5e-79 298.9 308 46.8
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 4.5e-79 298.9 302 46.7
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 7.8e-79 298.1 303 47.5
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 1.0e-78 297.7 295 46.4
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.0e-78 297.7 294 48.6
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.3e-78 297.4 295 47.8
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.7e-78 297.0 294 46.9
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.3e-78 296.6 293 48.8
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 2.3e-78 296.6 304 47.0
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 2.9e-78 296.2 299 48.2
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 2.9e-78 296.2 308 47.4
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 2.9e-78 296.2 294 48.3
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 2.9e-78 296.2 306 46.4
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 5.0e-78 295.4 294 47.3
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.0e-78 295.4 293 48.1
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.6e-78 295.0 302 46.7
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 6.6e-78 295.0 294 47.3
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 8.6e-78 294.7 280 48.2
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.1e-77 294.3 302 46.4
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 1.5e-77 293.9 294 46.3
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.5e-77 293.9 294 47.3
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.3e-77 292.7 294 46.6
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.3e-77 292.7 293 48.1
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 4.3e-77 292.4 304 45.7
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.6e-76 290.4 295 45.1
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 3.6e-76 289.3 293 47.1
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 3.6e-76 289.3 293 47.1
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 4.7e-76 288.9 300 46.7
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.1e-76 288.5 309 46.3
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 8.0e-76 288.1 294 47.3
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.8e-75 287.0 294 45.6
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 1.8e-75 287.0 290 46.9
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.8e-75 287.0 294 45.2
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.8e-75 287.0 303 46.2
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 3.0e-75 286.2 304 45.4
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 4.0e-75 285.8 294 45.2
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.5e-74 283.9 295 45.8
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 7.5e-74 281.6 310 45.5
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 9.8e-74 281.2 294 45.9
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.3e-73 280.8 302 47.4
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.3e-73 280.8 292 45.5
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.3e-73 280.8 292 45.2
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.3e-73 280.8 293 44.4
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.7e-73 280.4 302 47.0
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 2.2e-73 280.0 293 45.4
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 2.9e-73 279.6 303 46.5
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.6e-71 272.3 312 50.6
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 4.6e-71 272.3 274 46.7
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.1e-69 267.7 365 38.4
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 1.9e-69 266.9 307 43.0
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 6.2e-68 261.9 273 45.8
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 6.2e-68 261.9 273 45.8
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 6.8e-67 258.5 289 45.0
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.0e-66 256.9 293 43.3
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 5.8e-66 255.4 289 44.6
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 7.0e-64 248.4 288 45.1
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 2.0e-63 246.9 278 43.9
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.7e-63 246.5 245 46.5
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 3.3e-61 239.6 152 75.0
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 4.3e-61 239.2 293 41.3
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.4e-58 229.2 220 50.0
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 9.8e-58 228.0 220 47.7
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 6.4e-57 225.3 228 47.4
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 7.1e-56 221.9 164 70.1
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.2e-55 221.1 136 77.2
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.6e-55 220.7 228 46.1
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-51 207.6 136 72.8
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.4e-51 207.6 136 72.8
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-45 186.8 108 79.6
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 3.5e-39 166.4 168 47.0
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 4.5e-34 149.4 212 37.7
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 4.9e-33 146.0 284 31.3
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 6.4e-33 145.6 325 28.9
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.0e-30 138.3 181 38.7
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 2.1e-28 130.6 194 38.7
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.6e-12 77.8 74 45.9
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 8.2e-12 75.5 93 37.6
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 3.6e-07 60.1 74 37.8


User provided reference genes

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