Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 6.0e-46 187.2 97 100.0
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 8.4e-40 166.8 97 92.8
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 5.4e-39 164.1 97 91.8
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.3e-37 158.7 102 85.3
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 3.9e-37 157.9 98 88.8
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 4.3e-36 154.5 98 84.7
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 8.1e-35 150.2 90 88.9
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 9.0e-34 146.7 101 80.2
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 2.6e-33 145.2 89 83.1
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 3.4e-33 144.8 101 81.2
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.4e-33 144.8 96 80.2
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.3e-32 142.9 91 84.6
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 3.8e-32 141.4 101 80.2
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.1e-31 139.8 97 79.4
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.9e-31 139.0 89 79.8
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 5.4e-31 137.5 89 80.9
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 5.4e-31 137.5 89 83.1
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 9.3e-31 136.7 90 82.2
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 2.1e-30 135.6 89 83.1
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 2.1e-30 135.6 81 85.2
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.9e-29 131.3 89 74.2
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 6.7e-29 130.6 89 74.2
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.1e-28 129.8 94 74.5
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 1.5e-28 129.4 99 70.7
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.9e-28 129.0 89 73.0
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 2.5e-28 128.6 96 71.9
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 4.3e-28 127.9 84 83.3
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 5.6e-28 127.5 99 69.7
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 7.4e-28 127.1 63 95.2
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-27 126.3 69 88.4
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.3e-27 126.3 69 88.4
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.3e-27 126.3 65 92.3
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.6e-27 125.9 86 73.3
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.1e-27 125.6 85 71.8
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 2.8e-27 125.2 105 69.5
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.4e-26 122.1 70 81.4
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.4e-26 122.1 89 71.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 6.9e-26 120.6 84 72.6
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 6.9e-26 120.6 85 74.1
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 9.0e-26 120.2 75 78.7
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.2e-25 119.8 85 70.6
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.5e-25 119.4 80 76.2
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 3.4e-25 118.2 99 69.7
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.4e-25 118.2 86 72.1
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 3.4e-25 118.2 89 69.7
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 4.5e-25 117.9 89 68.5
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 4.5e-25 117.9 88 68.2
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 5.8e-25 117.5 86 69.8
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 5.8e-25 117.5 89 68.5
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 5.8e-25 117.5 71 78.9
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 5.8e-25 117.5 81 70.4
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 9.9e-25 116.7 102 59.8
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.3e-24 116.3 89 68.5
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 1.7e-24 115.9 81 71.6
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.7e-24 115.9 89 66.3
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 1.7e-24 115.9 89 64.0
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.7e-24 115.9 74 74.3
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 2.2e-24 115.5 62 85.5
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.2e-24 115.5 84 67.9
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.9e-24 115.2 64 84.4
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 2.9e-24 115.2 62 85.5
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 3.8e-24 114.8 89 70.8
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 3.8e-24 114.8 81 70.4
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 3.8e-24 114.8 99 59.6
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 4.9e-24 114.4 89 67.4
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 6.4e-24 114.0 62 83.9
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 6.4e-24 114.0 89 66.3
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 8.4e-24 113.6 89 64.0
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 8.4e-24 113.6 81 69.1
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 8.4e-24 113.6 96 63.5
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 8.4e-24 113.6 96 63.5
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 8.4e-24 113.6 96 63.5
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 8.4e-24 113.6 71 78.9
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.1e-23 113.2 88 65.9
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.1e-23 113.2 85 70.6
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.1e-23 113.2 77 74.0
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.4e-23 112.8 71 71.8
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.4e-23 112.8 84 64.3
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.4e-23 112.8 84 64.3
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.9e-23 112.5 65 80.0
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.9e-23 112.5 96 62.5
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.9e-23 112.5 68 79.4
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.9e-23 112.5 86 68.6
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 2.4e-23 112.1 89 66.3
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 4.2e-23 111.3 79 65.8
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 5.5e-23 110.9 79 65.8
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 5.5e-23 110.9 80 68.8
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 7.1e-23 110.5 84 67.9
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 7.1e-23 110.5 89 65.2
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.1e-23 110.5 96 62.5
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 7.1e-23 110.5 81 69.1
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 7.1e-23 110.5 64 81.2
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.2e-22 109.8 87 63.2
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.6e-22 109.4 89 64.0
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 2.1e-22 109.0 87 65.5
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 2.7e-22 108.6 87 60.9
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 3.5e-22 108.2 89 64.0
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.5e-22 108.2 63 77.8
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 4.6e-22 107.8 87 60.9
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 6.0e-22 107.5 66 77.3
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 6.0e-22 107.5 66 77.3
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.0e-21 106.7 71 70.4
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 2.3e-21 105.5 77 66.2
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.0e-21 105.1 71 69.0
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 3.9e-21 104.8 79 64.6
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 3.9e-21 104.8 102 58.8
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.9e-21 104.8 74 67.6
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 5.1e-21 104.4 74 66.2
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 5.1e-21 104.4 64 71.9
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 5.1e-21 104.4 80 65.0
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 6.7e-21 104.0 75 70.7
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 8.7e-21 103.6 83 66.3
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 1.1e-20 103.2 84 64.3
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.1e-20 103.2 79 63.3
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.1e-20 103.2 73 65.8
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.1e-20 103.2 79 64.6
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.5e-20 102.8 67 73.1
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.5e-20 102.8 89 56.2
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.9e-20 102.4 66 75.8
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 3.3e-20 101.7 68 72.1
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 7.4e-20 100.5 83 61.4
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 7.4e-20 100.5 122 50.8
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 7.4e-20 100.5 63 74.6
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 9.6e-20 100.1 59 74.6
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.3e-19 99.8 68 70.6
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 2.8e-19 98.6 55 80.0
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 3.7e-19 98.2 89 57.3
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 3.7e-19 98.2 89 57.3
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 4.8e-19 97.8 88 54.5
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 4.8e-19 97.8 89 57.3
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.4e-18 96.3 61 73.8
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.4e-18 96.3 61 73.8
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 9.0e-18 93.6 80 55.0
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 9.0e-18 93.6 78 59.0
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 2.6e-17 92.0 89 55.1
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.0e-16 90.1 63 66.7
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 4.9e-16 87.8 70 60.0
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 8.4e-16 87.0 71 54.9
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-15 86.7 59 67.8
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.4e-15 86.3 73 53.4
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.9e-15 85.9 90 50.0
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.9e-15 85.9 73 57.5
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.5e-15 85.5 79 54.4
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 3.2e-15 85.1 61 65.6
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.2e-15 85.1 59 66.1
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 4.2e-15 84.7 73 57.5
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.2e-15 84.7 59 66.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 7.1e-15 84.0 75 54.7
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.6e-14 81.3 83 54.2
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.3e-12 75.1 86 48.8
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 3.7e-11 71.6 49 69.4
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 8.2e-11 70.5 57 52.6
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 1.5e-09 66.2 57 73.7
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 5.9e-09 64.3 69 46.4
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 5.0e-08 61.2 39 71.8
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 6.5e-08 60.8 42 69.0


User provided reference genes

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