Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 1.4e-201 706.1 343 100.0
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 2.2e-183 645.6 342 91.8
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.9e-179 632.5 345 88.7
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 8.3e-175 617.1 346 86.1
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 4.5e-173 611.3 347 85.6
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 3.4e-168 595.1 344 84.0
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 4.4e-168 594.7 302 93.4
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 5.8e-168 594.3 348 83.0
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 5.8e-168 594.3 348 83.0
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 5.8e-168 594.3 347 82.7
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 7.5e-168 594.0 343 83.4
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 1.3e-167 593.2 348 82.8
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 2.4e-166 589.0 343 83.1
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 2.3e-161 572.4 343 81.3
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 8.9e-161 570.5 351 79.2
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 9.2e-158 560.5 321 83.8
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.0e-148 530.4 346 74.3
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 3.3e-147 525.4 347 74.1
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 5.6e-147 524.6 347 73.2
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 1.2e-146 523.5 322 79.5
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 3.6e-146 521.9 343 75.2
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 6.2e-146 521.2 347 73.2
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 8.9e-145 517.3 343 73.2
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.2e-144 516.9 349 73.6
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 3.4e-144 515.4 346 73.1
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 6.4e-143 511.1 348 72.1
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 8.4e-143 510.8 344 73.3
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.1e-142 510.4 351 73.8
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 2.4e-142 509.2 349 71.9
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 3.2e-142 508.8 344 72.4
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 5.4e-142 508.1 343 72.0
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 7.1e-142 507.7 342 72.5
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 1.2e-141 506.9 349 72.5
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.6e-141 506.5 347 72.6
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 4.6e-141 505.0 349 70.5
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 4.6e-141 505.0 346 72.5
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 4.6e-141 505.0 346 71.1
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 4.6e-141 505.0 346 72.0
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 4.6e-141 505.0 338 74.6
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 7.8e-141 504.2 347 72.0
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 7.8e-141 504.2 338 74.0
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.3e-140 502.7 346 72.0
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 6.6e-140 501.1 348 69.8
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 8.7e-140 500.7 346 70.8
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.1e-139 500.4 346 70.5
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.1e-139 500.4 346 70.2
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.5e-139 500.0 346 71.7
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 4.3e-139 498.4 378 66.4
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 1.2e-138 496.9 343 70.8
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 1.6e-138 496.5 338 71.3
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 2.1e-138 496.1 351 68.7
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.1e-138 496.1 346 70.8
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.1e-138 496.1 347 70.6
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 2.8e-138 495.7 348 69.3
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 4.7e-138 495.0 350 71.4
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 4.7e-138 495.0 346 70.2
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 8.1e-138 494.2 348 69.5
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 8.1e-138 494.2 347 70.3
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 8.1e-138 494.2 346 70.8
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.1e-137 493.8 347 70.3
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 1.4e-137 493.4 351 68.1
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.4e-137 492.7 347 70.0
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 2.4e-137 492.7 344 70.1
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 5.3e-137 491.5 351 69.8
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 1.2e-136 490.3 348 70.4
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 2.6e-136 489.2 343 69.4
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 4.4e-136 488.4 346 70.5
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 7.6e-136 487.6 344 69.8
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 7.6e-136 487.6 347 70.6
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 9.9e-136 487.3 362 66.0
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 9.9e-136 487.3 339 71.1
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 9.9e-136 487.3 339 70.8
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.7e-135 486.5 344 70.6
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 2.2e-135 486.1 344 69.5
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 2.9e-135 485.7 335 71.3
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.9e-135 485.0 374 66.0
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 8.4e-135 484.2 348 69.5
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 4.6e-133 478.4 347 70.6
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 6.6e-132 474.6 347 68.6
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 2.5e-131 472.6 338 68.9
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 4.3e-131 471.9 344 68.3
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 9.6e-131 470.7 345 66.7
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.3e-130 470.3 345 67.8
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 1.6e-130 469.9 347 66.6
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 4.8e-130 468.4 403 60.3
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 1.1e-129 467.2 345 66.7
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 1.4e-129 466.8 338 69.5
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 1.8e-129 466.5 327 69.4
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 3.1e-129 465.7 342 67.5
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 3.1e-129 465.7 324 73.8
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 6.9e-129 464.5 349 67.0
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 7.6e-128 461.1 347 67.1
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 7.6e-128 461.1 332 70.5
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 1.9e-126 456.4 340 67.4
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 2.4e-126 456.1 345 65.5
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 2.4e-126 456.1 344 66.6
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 1.2e-125 453.8 343 65.6
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 1.2e-125 453.8 336 67.9
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 3.5e-125 452.2 353 65.4
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 7.9e-125 451.1 339 63.7
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 3.0e-124 449.1 291 72.2
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 6.9e-121 438.0 301 71.1
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 6.2e-114 414.8 340 62.6
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 1.2e-112 410.6 246 76.8
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.0e-112 409.8 248 75.8
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 1.0e-111 407.5 232 80.2
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 4.9e-111 405.2 248 74.6
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.8e-108 396.7 233 81.5
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.6e-101 373.6 329 58.4
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 2.1e-101 373.2 303 61.1
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 9.1e-97 357.8 330 55.5
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 5.0e-95 352.1 251 72.5
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 1.3e-90 337.4 245 64.9
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 9.4e-86 321.2 243 67.9
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 9.4e-86 321.2 243 67.9
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 3.3e-83 312.8 241 67.2
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 9.7e-83 311.2 243 68.7
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 1.3e-82 310.8 242 66.1
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 3.7e-82 309.3 324 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.7e-66 257.3 175 70.9
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.0e-60 238.0 333 42.6
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 2.8e-58 229.9 162 68.5
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 5.0e-55 219.2 191 61.3
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.9e-54 217.2 192 60.4
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 2.3e-52 210.3 174 58.6
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 3.1e-52 209.9 199 52.3
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 6.0e-48 195.7 160 61.9
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 2.6e-27 127.1 73 82.2
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 8.4e-26 122.1 79 72.2
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 1.7e-18 97.8 57 71.9
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 1.2e-08 65.1 53 62.3


User provided reference genes

Program Settings