Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2075 Capsella rubella HOM05D007108 ORTHO05D009128 8.0e-143 510.4 251 100.0
AL1G34450 Arabidopsis lyrata HOM05D007108 ORTHO05D009128 8.6e-129 463.8 254 91.7
Thhalv10008558m.g Eutrema salsugineum HOM05D007108 ORTHO05D009128 2.8e-127 458.8 254 89.4
CARHR021740 Cardamine hirsuta HOM05D007108 ORTHO05D009128 4.0e-126 454.9 254 88.6
BraA06t24837Z Brassica rapa HOM05D007108 ORTHO05D009128 3.9e-121 438.3 250 86.0
A06p17400 Brassica napus HOM05D007108 ORTHO05D009128 6.6e-121 437.6 254 85.0
Sp1g18900 Schrenkiella parvula HOM05D007108 ORTHO05D009128 3.3e-120 435.3 254 87.0
Aa31LG7G5350 Aethionema arabicum HOM05D007108 ORTHO05D009128 4.3e-120 434.9 254 85.4
BcaB07g32123 Brassica carinata HOM05D007108 ORTHO05D009128 1.6e-119 433.0 255 84.7
BcaC05g26041 Brassica carinata HOM05D007108 ORTHO05D009128 1.2e-117 426.8 252 84.9
BolC5t30716H Brassica oleracea HOM05D007108 ORTHO05D009128 7.5e-117 424.1 252 84.5
AT1G21350 Arabidopsis thaliana HOM05D007108 ORTHO05D009128 4.1e-115 418.3 254 83.9
THA.LOC104812052 Tarenaya hassleriana HOM05D007108 ORTHO05D009128 1.2e-111 406.8 247 79.4
C05p20230 Brassica napus HOM05D007108 ORTHO05D009128 3.4e-109 398.7 238 84.5
Sopen04g026870 Solanum pennellii HOM05D007108 ORTHO05D009128 8.4e-100 367.5 248 74.6
RcHm_v2.0_Chr6g0276751 Rosa chinensis HOM05D007108 ORTHO05D009128 9.3e-99 364.0 197 85.3
FvH4_2g14420 Fragaria vesca HOM05D007108 ORTHO05D009128 1.2e-98 363.6 251 71.7
CAN.G1564.2 Capsicum annuum HOM05D007108 ORTHO05D009128 3.5e-98 362.1 246 74.0
Solyc04g064930.3 Solanum lycopersicum HOM05D007108 ORTHO05D009128 3.5e-98 362.1 248 73.4
MD05G1017900 Malus domestica HOM05D007108 ORTHO05D009128 1.0e-97 360.5 248 72.6
CSS0020358 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 3.0e-97 359.0 252 71.4
Lj1g0003350 Lotus japonicus HOM05D007108 ORTHO05D009128 3.0e-97 359.0 200 81.5
Ciclev10002261m.g Citrus clementina HOM05D007108 ORTHO05D009128 3.9e-97 358.6 248 70.2
Peaxi162Scf00263g00613 Petunia axillaris HOM05D007108 ORTHO05D009128 3.9e-97 358.6 244 71.7
CSS0038886 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.9e-96 356.3 254 70.9
Eucgr.F02729 Eucalyptus grandis HOM05D007108 ORTHO05D009128 1.9e-96 356.3 253 71.1
Phvul.009G136100 Phaseolus vulgaris HOM05D007108 ORTHO05D009128 1.9e-96 356.3 228 76.3
GSVIVG01010051001 Vitis vinifera HOM05D007108 ORTHO05D009128 5.6e-96 354.8 251 72.9
ClCG09G009870 Citrullus lanatus HOM05D007108 ORTHO05D009128 7.3e-96 354.4 247 72.1
Nn5g28655 Nelumbo nucifera HOM05D007108 ORTHO05D009128 7.3e-96 354.4 233 74.2
CsaV3_7G024840 Cucumis sativus L. HOM05D007108 ORTHO05D009128 9.6e-96 354.0 198 83.3
Thecc.08G146100 Theobroma cacao HOM05D007108 ORTHO05D009128 9.6e-96 354.0 250 70.0
VMungo1309G2491 Vigna mungo HOM05D007108 ORTHO05D009128 9.6e-96 354.0 216 78.7
Sed0009335 Sechium edule HOM05D007108 ORTHO05D009128 1.3e-95 353.6 246 71.5
Actinidia29517 Actinidia chinensis HOM05D007108 ORTHO05D009128 2.1e-95 352.8 203 81.8
MSTRG.1369 Avicennia marina HOM05D007108 ORTHO05D009128 2.8e-95 352.4 241 71.4
ECA232G2155 Erigeron canadensis HOM05D007108 ORTHO05D009128 2.8e-95 352.4 252 70.6
Gohir.D05G243400 Gossypium hirsutum HOM05D007108 ORTHO05D009128 3.6e-95 352.1 226 75.2
Prupe.8G021900 Prunus persica HOM05D007108 ORTHO05D009128 3.6e-95 352.1 214 78.0
Gohir.A05G242100 Gossypium hirsutum HOM05D007108 ORTHO05D009128 4.8e-95 351.7 251 71.3
QL02p024940 Quercus lobata HOM05D007108 ORTHO05D009128 4.8e-95 351.7 250 71.2
Gorai.009G252700 Gossypium raimondii HOM05D007108 ORTHO05D009128 6.2e-95 351.3 248 70.2
Haze_17721 Corylus avellana HOM05D007108 ORTHO05D009128 8.1e-95 350.9 197 83.2
Glyma.04G239800 Glycine max HOM05D007108 ORTHO05D009128 1.8e-94 349.7 237 72.2
Glyma.06G124100 Glycine max HOM05D007108 ORTHO05D009128 3.1e-94 349.0 238 72.3
TAR628G0410 Trochodendron aralioides HOM05D007108 ORTHO05D009128 3.1e-94 349.0 238 73.1
CANSAT25G1119 Cannabis sativa HOM05D007108 ORTHO05D009128 4.0e-94 348.6 249 70.7
vmacro13384 Vaccinium macrocarpon HOM05D007108 ORTHO05D009128 4.0e-94 348.6 251 70.1
Atru.chr13.2257 Acer truncatum HOM05D007108 ORTHO05D009128 9.0e-94 347.4 246 69.5
Duzib116G0089 Durio zibethinus HOM05D007108 ORTHO05D009128 9.0e-94 347.4 250 69.6
Migut.C01030 Erythranthe guttata HOM05D007108 ORTHO05D009128 9.0e-94 347.4 236 72.0
TPR.G18750 Trifolium pratense HOM05D007108 ORTHO05D009128 1.5e-93 346.7 206 80.6
Aqoxy5G02215 Aquilegia oxysepala HOM05D007108 ORTHO05D009128 2.6e-93 345.9 239 72.4
Manes.18G088801 Manihot esculenta HOM05D007108 ORTHO05D009128 3.4e-93 345.5 246 71.1
Lsat_1_v5_gn_9_77661 Lactuca sativa HOM05D007108 ORTHO05D009128 4.4e-93 345.1 254 69.3
Potri.002G071000 Populus trichocarpa HOM05D007108 ORTHO05D009128 5.8e-93 344.7 216 76.9
HanXRQChr16g0500661 Helianthus annuus HOM05D007108 ORTHO05D009128 9.9e-93 344.0 198 79.3
TWI34G1539 Tripterygium wilfordii HOM05D007108 ORTHO05D009128 9.9e-93 344.0 257 68.9
Cc10_g14220 Coffea canephora HOM05D007108 ORTHO05D009128 2.2e-92 342.8 248 67.3
Rhsim07G0025600 Rhododendron simsii HOM05D007108 ORTHO05D009128 2.9e-92 342.4 250 69.6
Cpa.g.sc49.50 Carica papaya HOM05D007108 ORTHO05D009128 8.4e-92 340.9 209 78.0
Ca_16662_v3 Cicer arietinum L. HOM05D007108 ORTHO05D009128 2.4e-91 339.3 200 79.5
Lalb_Chr11g0066481 Lupinus albus HOM05D007108 ORTHO05D009128 3.2e-91 339.0 202 76.2
DCAR_010274 Daucus carota HOM05D007108 ORTHO05D009128 4.2e-91 338.6 214 73.8
PSO063G1249 Papaver somniferum HOM05D007108 ORTHO05D009128 5.4e-91 338.2 254 67.7
Medtr3g090490 Medicago truncatula HOM05D007108 ORTHO05D009128 9.3e-91 337.4 223 75.3
PSO782G4411 Papaver somniferum HOM05D007108 ORTHO05D009128 9.3e-91 337.4 241 69.3
Sc02g0004350 Simmondsia chinensis HOM05D007108 ORTHO05D009128 2.1e-90 336.3 247 68.4
Oeu000778.2 Olea europaea HOM05D007108 ORTHO05D009128 7.9e-90 334.3 282 62.1
Hma1.2p1_0107F.1_g051540 Hydrangea macrophylla HOM05D007108 ORTHO05D009128 1.7e-89 333.2 216 75.0
arahy.Tifrunner.gnm1.ann1.3M80B2 Arachis hypogaea HOM05D007108 ORTHO05D009128 2.5e-88 329.3 187 81.8
Os07g0260300 Oryza sativa ssp. japonica HOM05D007108 ORTHO05D009128 2.8e-87 325.9 191 79.1
COL.COLO4_06005 Corchorus olitorius HOM05D007108 ORTHO05D009128 2.4e-86 322.8 246 67.5
CDE08G0865 Ceratophyllum demersum HOM05D007108 ORTHO05D009128 5.3e-86 321.6 200 75.0
SEGI_12340 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 7.6e-85 317.8 246 64.6
Nitab4.5_0000299g0220 Nicotiana tabacum HOM05D007108 ORTHO05D009128 1.7e-84 316.6 247 66.0
arahy.Tifrunner.gnm1.ann1.QUZ9E8 Arachis hypogaea HOM05D007108 ORTHO05D009128 8.4e-84 314.3 258 65.1
ATR1136G010 Amborella trichopoda HOM05D007108 ORTHO05D009128 1.9e-83 313.2 210 74.3
EL10Ac1g01484 Beta vulgaris HOM05D007108 ORTHO05D009128 3.2e-83 312.4 222 69.4
Pp3c20_22500 Physcomitrium patens HOM05D007108 ORTHO05D009128 4.8e-79 298.5 197 71.1
FAN20G1168 Fragaria x ananassa HOM05D007108 ORTHO05D009128 6.2e-79 298.1 215 71.2
CiPaw.16G016700 Carya illinoinensis HOM05D007108 ORTHO05D009128 1.1e-78 297.4 197 72.6
Dinv41114 Davidia involucrata HOM05D007108 ORTHO05D009128 5.3e-78 295.0 205 72.2
SGA_v2.0_scaffold24G10368 Striga asiatica HOM05D007108 ORTHO05D009128 1.5e-77 293.5 246 64.2
SEGI_05187 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 3.4e-77 292.4 185 71.4
AUR62026764 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.0e-76 290.8 208 67.8
CBR_g41654 Chara braunii HOM05D007108 ORTHO05D009128 3.8e-76 288.9 207 66.2
Actinidia01141 Actinidia chinensis HOM05D007108 ORTHO05D009128 7.9e-74 281.2 199 68.8
Pp3c23_490 Physcomitrium patens HOM05D007108 ORTHO05D009128 1.5e-72 276.9 175 69.1
Psat5g082320 Pisum sativum HOM05D007108 ORTHO05D009128 1.5e-72 276.9 182 75.3
AagrBONN_evm.TU.Sc2ySwM_117.292 Anthoceros agrestis HOM05D007108 ORTHO05D009128 1.3e-71 273.9 193 66.8
unitig_26.g9907 Utricularia gibba HOM05D007108 ORTHO05D009128 7.9e-66 254.6 203 62.6
AUR62013508 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.1e-64 250.8 248 55.6
Sabra02G0055700 Salix brachista HOM05D007108 ORTHO05D009128 2.5e-64 249.6 245 57.1
MELO3C024103.2 Cucumis melo HOM05D007108 ORTHO05D009128 4.3e-64 248.8 186 67.7
SMO228G0194 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 4.1e-62 242.3 148 76.4
SMO347G0599 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 5.1e-57 225.3 173 61.3
FAN15G3050 Fragaria x ananassa HOM05D007108 ORTHO05D009128 5.7e-56 221.9 242 54.1
FAN24G1879 Fragaria x ananassa HOM05D007108 ORTHO05D009128 7.4e-56 221.5 246 52.4
Nitab4.5_0000427g0030 Nicotiana tabacum HOM05D007108 ORTHO05D009128 7.4e-56 221.5 137 78.1
PSO384G3614 Papaver somniferum HOM05D007108 ORTHO05D009128 1.1e-51 207.6 199 56.3
Cre17.g715500 Chlamydomonas reinhardtii HOM05D007108 ORTHO05D009128 1.2e-50 204.1 200 51.0
Lj7A366T74 Lonicera japonica HOM05D007108 ORTHO05D009128 7.0e-46 188.3 200 52.5
Zm00001eb097150 Zea mays HOM05D007108 ORTHO05D009128 4.5e-45 185.7 163 61.3
SMO228G0031 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 1.0e-41 174.5 149 53.0
HanXRQChr03g0063741 Helianthus annuus HOM05D007108 ORTHO05D009128 4.0e-41 172.6 103 74.8
SEGI_19863 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 6.3e-39 165.2 105 73.3
Psat2g167120 Pisum sativum HOM05D007108 ORTHO05D003402 4.2e-27 125.9 71 84.5
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 7.0e-22 108.6 225 35.1
Psat7g065200 Pisum sativum HOM05D007108 ORTHO05D009128 2.7e-21 106.7 70 68.6
Dinv25820 Davidia involucrata HOM05D007108 ORTHO05D009128 1.2e-10 71.2 63 58.7


User provided reference genes

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