Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 2.8e-194 681.8 349 100.0
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 2.7e-173 612.1 350 88.9
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 2.5e-163 578.9 366 81.4
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 2.8e-162 575.5 368 80.4
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 1.8e-161 572.8 350 86.6
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 1.9e-158 562.8 352 81.8
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 1.5e-155 553.1 369 77.5
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 1.5e-155 553.1 369 77.5
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 3.7e-154 548.5 370 77.3
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 8.5e-151 537.3 369 75.3
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 1.6e-149 533.1 368 76.1
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 3.0e-148 528.9 349 77.7
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 3.0e-148 528.9 373 74.0
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 2.8e-125 452.6 354 68.1
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 9.8e-123 444.1 240 92.1
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 2.0e-107 393.3 342 61.4
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 2.2e-106 389.8 340 61.5
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 3.7e-106 389.0 368 60.1
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 3.6e-101 372.5 366 57.7
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 5.4e-97 358.6 309 59.5
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 4.6e-96 355.5 351 57.0
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 1.3e-95 354.0 364 56.0
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 1.7e-95 353.6 337 56.7
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 3.0e-95 352.8 309 59.2
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 3.9e-95 352.4 366 56.6
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 3.9e-95 352.4 348 56.9
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 5.1e-95 352.1 349 55.9
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 2.1e-93 346.7 352 56.2
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 6.2e-93 345.1 350 55.1
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 8.1e-93 344.7 335 57.9
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 2.3e-92 343.2 338 56.8
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 3.1e-92 342.8 344 54.7
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 1.2e-91 340.9 347 54.5
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 2.0e-91 340.1 370 54.6
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 3.4e-91 339.3 365 53.4
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 4.4e-91 339.0 350 54.0
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 5.8e-91 338.6 244 70.1
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 1.3e-90 337.4 302 58.9
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 6.4e-90 335.1 268 63.4
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 6.4e-90 335.1 259 64.9
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 4.1e-89 332.4 296 60.8
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 1.6e-88 330.5 307 57.7
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 2.7e-88 329.7 344 54.7
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 3.5e-88 329.3 244 67.2
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 3.5e-88 329.3 335 53.7
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 3.9e-87 325.9 326 54.6
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 1.1e-86 324.3 346 55.2
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 1.9e-86 323.6 287 59.9
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 3.3e-86 322.8 255 63.1
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 3.3e-86 322.8 345 53.3
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 9.6e-86 321.2 346 53.8
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 2.8e-85 319.7 251 64.5
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 6.2e-85 318.5 343 52.8
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 8.1e-85 318.2 337 51.9
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 1.1e-84 317.8 233 67.4
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 1.4e-84 317.4 347 53.3
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 1.8e-84 317.0 346 52.3
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 5.2e-84 315.5 283 59.4
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 6.9e-84 315.1 302 56.6
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 9.0e-84 314.7 311 56.6
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 1.2e-83 314.3 298 57.7
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 1.2e-83 314.3 251 62.9
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 1.5e-83 313.9 332 55.1
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 1.5e-83 313.9 280 58.2
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 2.6e-83 313.2 280 57.5
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 5.8e-83 312.0 333 52.9
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 7.6e-83 311.6 316 54.7
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 9.9e-83 311.2 280 57.5
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 1.7e-82 310.5 340 52.1
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 2.2e-82 310.1 321 54.8
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 2.9e-82 309.7 350 51.1
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 3.8e-82 309.3 271 58.3
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 3.8e-82 309.3 279 59.1
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 4.9e-82 308.9 261 62.5
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 4.9e-82 308.9 389 49.4
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 1.1e-81 307.8 284 58.8
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 1.9e-81 307.0 353 52.7
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 2.4e-81 306.6 348 51.1
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 4.2e-81 305.8 270 58.9
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 9.3e-81 304.7 312 54.2
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.2e-80 304.3 337 51.6
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 4.6e-80 302.4 337 51.6
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 6.0e-80 302.0 301 55.8
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 6.0e-80 302.0 291 57.0
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 6.0e-80 302.0 346 51.4
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 7.8e-80 301.6 337 51.3
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 1.3e-79 300.8 251 61.4
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 1.3e-79 300.8 261 60.2
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 1.7e-79 300.4 296 57.1
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 3.0e-79 299.7 302 55.0
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 1.5e-78 297.4 374 47.6
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 1.5e-78 297.4 393 48.6
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 8.1e-77 291.6 287 54.0
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 1.8e-76 290.4 260 58.5
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.4e-76 290.0 352 49.1
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 3.1e-76 289.7 227 64.3
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 2.6e-75 286.6 247 59.5
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 6.4e-74 282.0 355 49.0
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 3.2e-73 279.6 260 57.7
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 4.2e-73 279.3 198 69.7
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 7.1e-73 278.5 299 53.2
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 9.3e-73 278.1 205 69.3
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 9.3e-73 278.1 264 58.0
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 4.3e-70 269.2 189 70.4
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 2.6e-67 260.0 200 68.0
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 7.1e-65 251.9 253 54.2
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 3.9e-63 246.1 251 50.6
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 1.1e-62 244.6 263 49.0
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 1.5e-62 244.2 249 51.4
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 2.4e-60 236.9 212 57.1
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 4.6e-56 222.6 154 72.7
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 2.2e-50 203.8 249 44.2
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 1.3e-47 194.5 121 74.4
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 1.8e-47 194.1 171 55.0
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 3.0e-47 193.4 219 48.4
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 1.1e-46 191.4 191 51.8
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 2.5e-46 190.3 188 51.6
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 9.7e-46 188.3 103 83.5
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 2.6e-30 137.1 77 79.2
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 3.3e-30 136.7 69 88.4
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 1.2e-16 91.7 61 72.1
BolC8t49668H Brassica oleracea HOM05D005712 ORTHO05D032168 3.6e-16 90.1 133 42.1
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 6.1e-16 89.4 179 36.3
BcaB07g32077 Brassica carinata HOM05D005712 ORTHO05D007865 9.8e-14 82.0 68 64.7
BcaC07g39055 Brassica carinata HOM05D005712 ORTHO05D032168 6.3e-13 79.3 150 37.3
C08p20390 Brassica napus HOM05D005712 ORTHO05D032168 7.0e-12 75.9 159 35.2
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 5.5e-09 66.2 43 72.1


User provided reference genes

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