Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 3.4e-137 491.9 291 100.0
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 6.5e-96 354.8 296 72.0
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 2.4e-74 283.1 297 63.6
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 9.1e-74 281.2 293 64.2
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 9.1e-74 281.2 293 64.2
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 5.9e-73 278.5 296 61.8
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 5.0e-72 275.4 295 61.4
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 8.6e-72 274.6 302 62.3
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 1.9e-71 273.5 296 60.8
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 1.9e-71 273.5 295 62.7
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 3.6e-70 269.2 299 60.9
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 2.3e-69 266.5 299 60.2
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 4.4e-68 262.3 300 53.3
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 2.6e-60 236.5 305 57.4
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 2.6e-60 236.5 300 51.3
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 3.7e-59 232.6 305 57.7
BolC3t16044H Brassica oleracea HOM05D008819 ORTHO05D003197 4.7e-54 215.7 205 64.9
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 6.4e-51 205.3 303 46.5
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.3e-48 196.8 304 47.0
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 5.1e-48 195.7 309 48.9
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 1.2e-46 191.0 323 48.6
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.6e-46 190.7 324 45.1
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 2.1e-46 190.3 225 54.7
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 6.2e-46 188.7 321 44.9
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 1.4e-45 187.6 304 48.4
CARHR020580 Cardamine hirsuta HOM05D008819 ORTHO05D003197 8.9e-45 184.9 177 63.3
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 1.7e-43 180.6 309 46.9
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 1.7e-43 180.6 309 47.6
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 6.4e-43 178.7 309 47.9
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 5.4e-42 175.6 309 46.0
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 8.6e-40 168.3 303 44.9
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 1.5e-39 167.5 210 52.9
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 1.5e-36 157.5 210 51.9
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 2.2e-35 153.7 221 45.7
THA.LOC104813240 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.3e-32 144.4 285 42.5
BcaC03g14371 Brassica carinata HOM05D008819 ORTHO05D003197 4.2e-26 122.9 212 46.7
C02p17840 Brassica napus HOM05D008819 ORTHO05D003197 7.1e-26 122.1 120 65.0
A08p16950 Brassica napus HOM05D008819 ORTHO05D003197 3.6e-22 109.8 116 62.1
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 3.4e-20 103.2 315 32.7
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 4.2e-18 96.3 304 34.5
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 4.2e-18 96.3 311 34.7
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.0e-16 91.7 297 32.7
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.3e-16 91.3 297 35.0
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 8.7e-16 88.6 231 33.8
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 8.7e-16 88.6 297 35.4
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.6e-14 84.3 319 31.0
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 4.8e-14 82.8 336 27.7
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 4.8e-14 82.8 241 33.2
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.8e-13 80.9 232 30.6
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 2.4e-13 80.5 232 30.6
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 4.0e-13 79.7 241 31.1
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 5.3e-13 79.3 232 30.6
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 5.3e-13 79.3 317 27.4
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 5.3e-13 79.3 315 34.6
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.2e-12 78.2 230 31.7
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.5e-12 77.8 216 31.5
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.6e-12 77.0 234 30.3
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 4.5e-12 76.3 221 31.7
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 5.8e-12 75.9 242 29.8
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.0e-11 75.1 299 33.1
BraA08t33657Z Brassica rapa HOM05D008819 ORTHO05D003197 1.7e-11 74.3 116 48.3
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.7e-11 74.3 222 32.4
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.7e-11 74.3 222 32.4
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 2.2e-11 73.9 331 29.6
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 3.8e-11 73.2 318 29.9
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 4.9e-11 72.8 327 29.1
AL2G36300 Arabidopsis lyrata HOM05D014797 ORTHO05D016596 1.1e-10 71.6 135 40.7
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 2.5e-10 70.5 328 33.2
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 2.5e-10 70.5 134 36.6
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 3.2e-10 70.1 226 32.7
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 3.2e-10 70.1 235 29.8
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 3.2e-10 70.1 329 29.5
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.1e-10 68.9 341 31.4
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.6e-09 67.8 326 31.9
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 2.1e-09 67.4 246 27.6
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.1e-09 67.4 344 34.6
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 6.0e-09 65.9 205 28.8
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 7.9e-09 65.5 67 58.2
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 7.9e-09 65.5 246 28.5
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.0e-08 65.1 245 29.8
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.3e-08 64.7 220 29.5
CARHR069790 Cardamine hirsuta HOM05D014797 ORTHO05D016596 1.8e-08 64.3 142 36.6
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 1.8e-08 64.3 236 27.5
Thhalv10009529m.g Eutrema salsugineum HOM05D014797 ORTHO05D016596 3.0e-08 63.5 108 46.3
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 3.9e-08 63.2 240 25.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.1e-08 62.8 343 35.0
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 5.1e-08 62.8 235 28.5
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 1.5e-07 61.2 104 38.5
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 1.5e-07 61.2 242 30.6
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 1.5e-07 61.2 240 26.2
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 2.5e-07 60.5 244 27.9
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 3.3e-07 60.1 261 28.7
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 3.3e-07 60.1 239 29.3
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 9.6e-07 58.5 233 27.9
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 9.6e-07 58.5 250 28.4
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 9.6e-07 58.5 146 30.8
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 9.6e-07 58.5 232 29.3
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 9.6e-07 58.5 265 26.8
CARHR020590 Cardamine hirsuta HOM05D008819 ORTHO05D003197 1.3e-06 58.2 39 84.6
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 1.6e-06 57.8 321 28.0
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 2.1e-06 57.4 107 30.8
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.1e-06 57.4 146 32.9
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.1e-06 57.4 322 30.1
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 2.8e-06 57.0 235 27.2
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.7e-06 56.6 242 27.3
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.7e-06 56.6 216 27.3
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 4.8e-06 56.2 107 29.0
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 4.8e-06 56.2 240 28.8
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 4.8e-06 56.2 315 24.1
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 6.2e-06 55.8 227 28.6
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 6.2e-06 55.8 341 28.4
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 6.2e-06 55.8 223 26.9
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 8.2e-06 55.5 154 29.2


User provided reference genes

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