Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 9.2e-270 932.9 462 100.0
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.7e-253 878.2 462 94.8
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.7e-253 878.2 462 94.8
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.1e-250 868.6 462 92.9
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.6e-248 861.7 462 91.6
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 7.1e-246 853.6 459 91.7
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 5.3e-241 837.4 452 92.3
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 7.9e-237 823.5 461 88.5
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 1.3e-236 822.8 461 88.3
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 2.3e-236 822.0 461 88.3
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 3.0e-236 821.6 461 88.3
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 5.1e-228 794.3 462 85.1
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 3.9e-220 768.1 452 83.4
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 7.9e-205 717.2 440 77.5
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 7.4e-203 710.7 458 77.3
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 9.1e-201 703.7 435 78.2
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.2e-200 703.4 434 79.5
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.0e-199 700.3 424 79.5
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.7e-199 699.5 456 76.3
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 1.7e-199 699.5 440 75.9
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 3.2e-198 695.3 444 76.1
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 6.1e-197 691.0 438 76.0
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 7.9e-197 690.6 431 78.0
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 7.9e-197 690.6 444 75.7
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.0e-196 688.7 444 75.7
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 3.9e-196 688.3 444 75.5
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.9e-196 688.3 432 77.1
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.5e-195 686.4 456 75.0
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.5e-195 686.4 456 75.0
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.0e-195 686.0 431 77.0
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.2e-194 682.6 430 76.3
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 5.9e-192 674.5 421 77.0
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 7.7e-192 674.1 420 77.1
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.0e-191 673.7 441 74.1
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.0e-191 673.7 447 73.4
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 1.7e-191 672.9 446 72.2
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.7e-191 672.9 429 75.5
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 2.2e-191 672.5 443 74.7
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 2.9e-191 672.2 444 73.2
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 5.0e-191 671.4 464 71.1
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.5e-190 669.8 441 72.8
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.5e-190 669.8 445 73.0
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 1.5e-190 669.8 473 70.6
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 2.5e-190 669.1 460 71.1
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.6e-189 666.4 453 72.0
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.1e-189 666.0 446 72.2
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 3.6e-189 665.2 430 75.1
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 3.6e-189 665.2 429 73.9
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 4.7e-189 664.8 429 74.6
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 6.1e-189 664.5 446 73.1
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.0e-189 664.1 448 71.2
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 1.0e-188 663.7 430 73.3
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 4.0e-188 661.8 457 71.1
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 4.0e-188 661.8 426 74.4
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 5.2e-188 661.4 429 75.1
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 6.7e-188 661.0 447 73.8
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.1e-187 660.2 432 73.8
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 1.1e-187 660.2 437 71.6
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.5e-187 659.8 438 72.4
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 2.0e-187 659.4 438 73.1
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 2.0e-187 659.4 430 73.5
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 3.3e-187 658.7 435 74.3
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 9.7e-187 657.1 430 74.2
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.3e-186 656.8 438 72.1
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.3e-186 656.8 438 72.1
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.3e-186 656.8 447 71.1
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.3e-186 656.8 437 71.9
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.7e-186 656.4 443 70.7
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.2e-186 656.0 430 73.7
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 2.2e-186 656.0 451 70.3
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.8e-186 655.6 447 71.6
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.8e-186 655.6 425 73.9
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 3.7e-186 655.2 430 73.7
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 3.7e-186 655.2 454 70.5
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 3.7e-186 655.2 443 71.1
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 4.8e-186 654.8 441 72.6
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.2e-186 654.1 438 71.7
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.2e-186 654.1 438 71.7
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 8.2e-186 654.1 453 70.6
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.1e-185 653.7 445 71.5
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.4e-185 653.3 429 73.2
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 2.4e-185 652.5 439 71.1
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 3.1e-185 652.1 437 71.2
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 4.1e-185 651.7 425 71.8
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 5.3e-185 651.4 444 70.5
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 5.3e-185 651.4 429 73.7
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 9.1e-185 650.6 438 71.5
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 1.2e-184 650.2 446 70.2
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.6e-184 649.8 438 70.8
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.7e-184 649.0 443 70.4
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 2.7e-184 649.0 451 69.2
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 3.5e-184 648.7 457 69.4
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 7.7e-184 647.5 429 73.4
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.3e-183 646.7 435 71.5
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.2e-183 646.0 439 71.3
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.2e-183 646.0 434 71.2
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 8.5e-183 644.0 423 74.5
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.2e-182 642.1 451 68.7
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 4.2e-182 641.7 451 68.7
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 5.5e-182 641.3 441 70.1
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 9.4e-182 640.6 411 76.6
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 9.4e-182 640.6 432 72.2
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 6.1e-181 637.9 425 73.9
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.3e-180 636.0 441 70.5
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 4.0e-180 635.2 429 70.2
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 6.8e-180 634.4 443 68.8
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 6.8e-180 634.4 435 71.5
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 6.3e-178 627.9 407 75.2
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 2.0e-176 622.9 424 71.5
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.9e-176 621.3 442 67.9
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 1.7e-175 619.8 439 68.8
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.9e-175 619.0 417 72.9
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 2.9e-175 619.0 450 68.0
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 5.0e-175 618.2 449 67.7
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 5.0e-175 618.2 450 67.1
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 6.5e-175 617.8 440 68.9
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.9e-174 616.3 442 69.0
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.5e-174 615.9 426 69.7
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 2.5e-174 615.9 454 66.7
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 5.5e-174 614.8 452 67.5
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.7e-173 611.7 438 66.0
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.8e-172 609.8 430 68.4
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 2.3e-172 609.4 431 68.4
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 5.2e-172 608.2 429 68.1
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 6.8e-172 607.8 457 66.1
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 4.9e-170 601.7 426 68.8
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.4e-169 600.1 445 66.5
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.8e-169 599.7 423 69.5
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.4e-169 599.4 391 72.4
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 5.4e-169 598.2 424 69.1
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 9.2e-169 597.4 423 69.3
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 2.0e-168 596.3 434 66.1
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 2.7e-168 595.9 446 65.2
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 3.5e-168 595.5 438 66.9
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.7e-167 593.2 381 74.8
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 2.9e-167 592.4 429 66.2
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 1.4e-164 583.6 385 72.7
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 3.0e-164 582.4 365 79.5
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 6.4e-162 574.7 370 74.3
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.4e-161 573.5 365 74.0
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.8e-161 573.2 447 64.2
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 2.3e-159 566.2 386 71.0
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.9e-146 522.7 441 60.5
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 3.7e-146 522.3 371 68.5
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.6e-144 515.4 423 60.8
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.3e-142 508.1 450 60.0
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 4.4e-139 498.8 421 59.6
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-137 493.8 424 58.3
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.6e-133 480.3 419 56.3
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.1e-124 449.5 448 53.3
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 4.5e-115 419.1 282 72.0
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 7.6e-115 418.3 316 63.9
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 3.4e-107 392.9 460 46.5
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.6e-101 374.0 273 67.4
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 4.6e-96 355.9 432 44.2
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.3e-95 354.4 425 44.7
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 5.3e-92 342.4 232 70.7
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 6.9e-92 342.0 235 68.5
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 2.4e-84 317.0 381 44.4
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.7e-77 294.3 272 60.7
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 2.2e-66 257.3 147 81.0
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 3.5e-59 233.4 156 73.7
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.8e-44 184.5 113 77.9
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.1e-39 168.7 127 63.8
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 4.9e-37 159.8 444 28.2
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.3e-37 159.1 95 75.8
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.2e-27 128.6 79 74.7
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.7e-19 100.9 84 56.0
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.2e-13 81.3 73 54.8
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 3.8e-13 80.5 60 63.3
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.3e-08 65.5 79 46.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.6e-08 65.1 196 29.6
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 9.0e-07 59.3 43 62.8
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.2e-06 58.9 199 27.6
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.0e-06 58.2 43 60.5
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 5.8e-06 56.6 227 24.7


User provided reference genes

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