Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 2.6e-132 475.3 228 100.0
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 6.6e-128 460.7 228 96.1
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 4.3e-127 458.0 228 96.1
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 2.0e-124 449.1 228 93.0
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 4.4e-124 448.0 228 93.9
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 4.4e-124 448.0 228 93.9
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 9.9e-124 446.8 228 93.4
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 2.7e-121 438.7 235 89.8
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 1.0e-120 436.8 228 92.5
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 3.0e-120 435.3 235 90.2
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 3.0e-120 435.3 235 90.2
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 1.9e-119 432.6 231 90.5
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 9.2e-114 413.7 229 84.7
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 1.2e-113 413.3 229 85.2
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 8.7e-112 407.1 225 84.9
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 1.5e-111 406.4 229 83.4
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 5.6e-111 404.4 229 83.8
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 4.0e-109 398.3 229 82.1
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 1.2e-108 396.7 225 82.7
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 1.7e-107 392.9 225 81.8
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 4.9e-107 391.3 226 77.9
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 6.4e-107 391.0 225 80.9
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 6.4e-107 391.0 225 80.9
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 5.4e-106 387.9 225 79.1
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 2.7e-105 385.6 226 79.2
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 2.7e-105 385.6 225 80.4
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 3.5e-105 385.2 225 79.1
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 3.5e-105 385.2 225 80.9
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 7.8e-105 384.0 225 80.0
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 1.0e-104 383.6 226 77.0
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 2.3e-104 382.5 225 78.7
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 3.9e-104 381.7 225 80.0
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 6.6e-104 380.9 234 76.9
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 8.7e-104 380.6 225 77.3
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 1.1e-103 380.2 225 78.7
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 1.9e-103 379.4 225 77.3
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 2.5e-103 379.0 225 77.3
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 4.3e-103 378.3 225 77.8
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 4.3e-103 378.3 225 76.4
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 4.3e-103 378.3 225 76.4
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 4.3e-103 378.3 225 76.4
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 7.3e-103 377.5 225 78.2
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 7.3e-103 377.5 225 78.7
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 1.6e-102 376.3 225 79.1
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 2.1e-102 375.9 225 76.9
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 2.1e-102 375.9 225 76.9
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 4.8e-102 374.8 225 76.0
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 8.1e-102 374.0 227 75.8
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 8.1e-102 374.0 223 78.0
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 8.1e-102 374.0 240 72.5
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 8.1e-102 374.0 237 74.7
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 1.8e-101 372.9 225 77.8
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 4.0e-101 371.7 250 72.0
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 1.5e-100 369.8 225 74.7
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 5.8e-100 367.9 223 79.8
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 9.9e-100 367.1 225 77.8
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 1.7e-99 366.3 225 77.8
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 2.2e-99 365.9 225 76.0
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 4.9e-99 364.8 225 74.7
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 8.4e-99 364.0 226 73.9
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 8.4e-99 364.0 274 66.1
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 1.4e-98 363.2 225 74.2
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 1.4e-98 363.2 208 77.4
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 1.9e-98 362.8 225 74.2
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 1.9e-98 362.8 227 74.0
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 1.9e-98 362.8 225 74.2
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 2.4e-98 362.5 225 73.3
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 3.2e-98 362.1 225 74.2
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 5.4e-98 361.3 225 73.8
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 7.1e-98 360.9 225 72.4
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 9.3e-98 360.5 225 74.7
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 9.3e-98 360.5 243 71.6
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 2.7e-97 359.0 225 72.0
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 4.6e-97 358.2 225 73.3
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 1.0e-96 357.1 225 72.9
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 1.8e-96 356.3 225 73.8
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 2.3e-96 355.9 225 72.4
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 3.9e-96 355.1 225 72.9
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 6.7e-96 354.4 227 74.9
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 1.5e-95 353.2 225 71.6
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 6.2e-94 347.8 225 72.0
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 1.1e-93 347.1 208 75.5
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 6.9e-93 344.4 214 72.9
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 9.0e-93 344.0 227 72.2
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 2.6e-92 342.4 227 71.8
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 2.9e-91 339.0 228 69.3
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 3.8e-91 338.6 215 76.7
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 3.8e-91 338.6 211 74.4
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 9.3e-90 334.0 226 70.4
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 3.9e-88 328.6 208 72.1
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 1.4e-85 320.1 225 68.0
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 2.2e-83 312.8 245 66.9
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 2.2e-83 312.8 234 69.2
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 1.1e-82 310.5 229 66.4
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 3.5e-81 305.4 248 64.1
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 1.9e-79 299.7 272 59.9
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 5.9e-76 288.1 261 58.2
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 1.8e-72 276.6 165 77.6
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 5.1e-72 275.0 145 84.8
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 2.0e-71 273.1 159 78.6
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 2.5e-71 272.7 166 75.3
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 1.4e-66 256.9 166 69.9
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 8.8e-64 247.7 146 77.4
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 2.0e-63 246.5 225 59.1
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 7.4e-63 244.6 221 51.6
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 2.2e-62 243.0 280 51.4
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 2.2e-62 243.0 280 51.4
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 6.3e-62 241.5 169 68.6
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 3.1e-61 239.2 225 56.4
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 4.5e-60 235.3 157 71.3
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.3e-59 233.8 225 57.3
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 6.5e-59 231.5 221 47.5
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 9.7e-55 217.6 133 75.2
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 1.7e-54 216.9 225 52.9
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 1.4e-53 213.8 227 44.5
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 1.0e-48 197.6 147 63.3
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 2.3e-48 196.4 119 73.9
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 5.7e-39 165.2 93 77.4
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 9.1e-37 157.9 196 42.3
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 8.6e-35 151.4 198 36.4
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 7.3e-26 121.7 75 82.7
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 2.8e-25 119.8 272 28.3
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 3.4e-23 112.8 156 41.0
TPR.G16651 Trifolium pratense HOM05D006122 ORTHO05D007426 4.4e-23 112.5 67 79.1
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 3.2e-21 106.3 99 53.5
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 8.6e-19 98.2 55 81.8
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 2.9e-14 83.2 190 26.3
Actinidia31157 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.5e-10 70.9 37 81.1
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 1.5e-10 70.9 187 27.8
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 4.7e-09 65.9 181 25.4
EL10Ac8g20559 Beta vulgaris HOM05D005310 ORTHO05D006920 1.1e-08 64.7 181 27.6
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 1.8e-08 63.9 167 25.1
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 4.0e-08 62.8 192 25.5
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 4.0e-08 62.8 181 26.0
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 4.0e-08 62.8 181 26.0
PGR042G1369 Punica granatum HOM05D005310 ORTHO05D006920 5.2e-08 62.4 186 26.9
Aa31LG6G1520 Aethionema arabicum HOM05D005310 ORTHO05D006920 8.9e-08 61.6 182 24.2
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 8.9e-08 61.6 181 25.4
HanXRQChr11g0343901 Helianthus annuus HOM05D005310 ORTHO05D006920 8.9e-08 61.6 199 25.1
AUR62041821 Chenopodium quinoa HOM05D005310 ORTHO05D006920 1.2e-07 61.2 181 26.5
Hma1.2p1_2416F.1_g321730 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 1.2e-07 61.2 163 25.2
GSVIVG01021256001 Vitis vinifera HOM05D005310 ORTHO05D006920 2.0e-07 60.5 181 23.8
CsaV3_1G033090 Cucumis sativus L. HOM05D005310 ORTHO05D006920 3.4e-07 59.7 181 24.9
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 3.4e-07 59.7 181 24.9
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 3.4e-07 59.7 181 23.2
Cre05.g244800 Chlamydomonas reinhardtii HOM05D005310 ORTHO05D006920 4.4e-07 59.3 133 30.1
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 4.4e-07 59.3 183 25.7
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 5.8e-07 58.9 191 24.6
Prupe.4G066900 Prunus persica HOM05D005310 ORTHO05D006920 5.8e-07 58.9 181 23.8
Rhsim02G0147000 Rhododendron simsii HOM05D005310 ORTHO05D006920 5.8e-07 58.9 150 24.7
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 7.6e-07 58.5 163 23.9
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 7.6e-07 58.5 181 24.9
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 7.6e-07 58.5 181 24.9
Sed0028201 Sechium edule HOM05D005310 ORTHO05D006920 7.6e-07 58.5 181 25.4
ATR0012G016 Amborella trichopoda HOM05D005310 ORTHO05D006920 9.9e-07 58.2 220 24.5
Pp3c26_9450 Physcomitrium patens HOM05D005310 ORTHO05D006920 9.9e-07 58.2 187 24.1
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 1.3e-06 57.8 191 24.6
MELO3C002677.2 Cucumis melo HOM05D005310 ORTHO05D006920 1.3e-06 57.8 181 24.9
Solyc02g072160.4 Solanum lycopersicum HOM05D005310 ORTHO05D006920 1.3e-06 57.8 182 23.6
Zm00001eb204900 Zea mays HOM05D005310 ORTHO05D006920 1.3e-06 57.8 136 28.7
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 1.7e-06 57.4 191 24.6
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 1.7e-06 57.4 191 24.6
CAN.G411.52 Capsicum annuum HOM05D005310 ORTHO05D006920 1.7e-06 57.4 182 23.6
Os02g0234500 Oryza sativa ssp. japonica HOM05D005310 ORTHO05D006920 1.7e-06 57.4 152 26.3
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 1.7e-06 57.4 182 23.6
Peaxi162Scf00202g01112 Petunia axillaris HOM05D005310 ORTHO05D006920 2.9e-06 56.6 182 25.3
RcHm_v2.0_Chr5g0011651 Rosa chinensis HOM05D005310 ORTHO05D006920 3.7e-06 56.2 150 24.0
Hund04397 Selenicereus undatus HOM05D005310 ORTHO05D006920 3.7e-06 56.2 117 31.6
CSS0016268 Camellia sinensis var. sinensis HOM05D005310 ORTHO05D006920 4.9e-06 55.8 192 23.4
FvH4_3g07310 Fragaria vesca HOM05D005310 ORTHO05D006920 4.9e-06 55.8 181 23.8
Lj1A1175T55 Lonicera japonica HOM05D005310 ORTHO05D006920 4.9e-06 55.8 167 25.7
CDE04G2110 Ceratophyllum demersum HOM05D005310 ORTHO05D006920 6.4e-06 55.5 157 24.2
Nitab4.5_0005937g0010 Nicotiana tabacum HOM05D005310 ORTHO05D006920 6.4e-06 55.5 182 23.1
Nn3g21104 Nelumbo nucifera HOM05D005310 ORTHO05D006920 8.4e-06 55.1 194 23.2


User provided reference genes

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