Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 5.8e-52 207.2 101 100.0
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.0e-43 179.9 97 91.8
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.0e-43 179.9 97 90.7
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.9e-42 175.6 98 87.8
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 7.4e-39 163.7 98 82.7
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 8.2e-38 160.2 98 79.6
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 1.8e-37 159.1 98 78.6
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 2.4e-37 158.7 98 78.6
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 2.4e-37 158.7 98 78.6
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 4.1e-37 157.9 98 78.6
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 4.1e-37 157.9 98 77.6
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 7.6e-36 153.7 97 76.3
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 7.6e-36 153.7 97 76.3
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 1.0e-35 153.3 97 75.3
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 1.0e-35 153.3 97 75.3
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.1e-34 149.8 98 76.5
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 5.1e-32 141.0 89 75.3
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 9.7e-31 136.7 92 76.1
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.7e-22 109.4 96 61.5
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 2.8e-22 108.6 102 57.8
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 4.8e-22 107.8 102 57.8
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 4.8e-22 107.8 102 57.8
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 4.8e-22 107.8 102 57.8
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 1.1e-21 106.7 104 57.7
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.4e-21 106.3 104 55.8
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.8e-21 105.9 104 57.7
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.8e-21 105.9 104 57.7
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.4e-21 105.5 104 56.7
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 3.1e-21 105.1 104 57.7
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 3.1e-21 105.1 104 57.7
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 3.1e-21 105.1 104 57.7
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 3.1e-21 105.1 103 54.4
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 6.9e-21 104.0 102 56.9
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 6.9e-21 104.0 105 55.2
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.5e-20 102.8 100 58.0
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.0e-20 102.4 106 56.6
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 2.0e-20 102.4 104 54.8
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 2.6e-20 102.1 104 54.8
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 4.5e-20 101.3 101 55.4
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.0e-19 100.1 103 56.3
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 2.9e-19 98.6 98 57.1
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 1.1e-18 96.7 105 54.3
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 5.1e-16 87.8 96 53.1
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 2.2e-14 82.4 111 45.0
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 3.5e-12 75.1 91 46.2
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 7.7e-12 73.9 101 47.5
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 1.3e-11 73.2 87 49.4
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.1e-10 70.1 113 41.6
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 1.1e-10 70.1 112 43.8
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 1.9e-10 69.3 71 54.9
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 2.5e-10 68.9 99 43.4
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 2.5e-10 68.9 102 43.1
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 5.5e-10 67.8 97 42.3
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 9.4e-10 67.0 101 42.6
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.6e-09 66.2 89 43.8
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 2.7e-09 65.5 95 38.9
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 3.6e-09 65.1 102 41.2
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 6.1e-09 64.3 109 42.2
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 8.0e-09 63.9 116 37.9
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 8.0e-09 63.9 101 36.6
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 8.0e-09 63.9 101 36.6
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 8.0e-09 63.9 101 38.6
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 8.0e-09 63.9 100 41.0
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 1.0e-08 63.5 90 46.7
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 1.0e-08 63.5 96 41.7
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.0e-08 63.5 108 34.3
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.0e-08 63.5 101 39.6
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 1.0e-08 63.5 102 39.2
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 1.8e-08 62.8 96 37.5
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.8e-08 62.8 100 38.0
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.8e-08 62.8 103 35.9
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.8e-08 62.8 95 41.1
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.3e-08 62.4 100 38.0
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 2.3e-08 62.4 118 36.4
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 2.3e-08 62.4 115 38.3
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.0e-08 62.0 90 36.7
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 3.0e-08 62.0 97 40.2
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 3.0e-08 62.0 98 38.8
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 4.0e-08 61.6 115 39.1
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 5.2e-08 61.2 95 41.1
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 8.8e-08 60.5 99 40.4
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.1e-07 60.1 40 72.5
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.5e-07 59.7 96 43.8
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.0e-07 59.3 95 34.7
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 2.0e-07 59.3 95 38.9
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.0e-07 59.3 108 39.8
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 2.0e-07 59.3 98 38.8
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.0e-07 59.3 98 38.8
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.0e-07 59.3 98 38.8
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.6e-07 58.9 106 36.8
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 4.4e-07 58.2 109 37.6
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 4.4e-07 58.2 108 38.9
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 4.4e-07 58.2 92 41.3
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 5.7e-07 57.8 90 42.2
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 5.7e-07 57.8 97 34.0
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 7.5e-07 57.4 83 45.8
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.5e-07 57.4 108 39.8
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 7.5e-07 57.4 105 36.2
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 7.5e-07 57.4 95 40.0
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 9.7e-07 57.0 101 39.6
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 1.3e-06 56.6 97 36.1
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.7e-06 56.2 88 37.5
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.7e-06 56.2 100 36.0
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.7e-06 56.2 100 36.0
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 2.2e-06 55.8 83 43.4
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.2e-06 55.8 91 39.6
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 2.8e-06 55.5 89 38.2
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.8e-06 55.5 83 43.4
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.8e-06 55.5 83 43.4
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 2.8e-06 55.5 95 37.9
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 2.8e-06 55.5 110 37.3
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 3.7e-06 55.1 91 37.4
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 3.7e-06 55.1 119 34.5
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.7e-06 55.1 97 36.1
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 4.8e-06 54.7 114 33.3
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.8e-06 54.7 104 33.7
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 6.3e-06 54.3 45 60.0
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.3e-06 54.3 94 36.2
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 6.3e-06 54.3 116 37.9
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.2e-06 53.9 88 38.6
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 8.2e-06 53.9 34 73.5
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 8.2e-06 53.9 41 56.1


User provided reference genes

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