Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 4.3e-78 294.7 156 100.0
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.7e-72 275.4 156 92.9
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.0e-71 273.5 153 94.1
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.6e-70 267.7 157 90.4
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 7.6e-67 257.3 157 89.2
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.2e-66 255.8 157 86.0
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.2e-64 250.0 157 84.7
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.2e-64 250.0 158 87.3
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 4.6e-64 248.1 157 84.1
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 6.0e-64 247.7 157 83.4
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 1.0e-63 246.9 161 86.3
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 1.0e-63 246.9 161 86.3
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.3e-63 246.5 157 82.8
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 2.3e-63 245.7 157 83.4
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 3.0e-63 245.4 157 84.7
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 3.9e-63 245.0 161 85.7
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 7.3e-62 240.7 160 81.2
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.8e-61 238.8 157 80.3
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.4e-60 235.7 158 81.0
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 1.2e-59 233.4 158 80.4
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 2.0e-59 232.6 158 79.7
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 2.0e-59 232.6 158 79.7
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 2.6e-59 232.3 158 79.7
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 4.2e-57 224.9 157 76.4
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 3.9e-55 218.4 130 92.3
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 1.5e-54 216.5 130 91.5
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 1.6e-53 213.0 138 79.0
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 2.1e-53 212.6 155 72.9
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 3.7e-53 211.8 138 77.5
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 8.1e-53 210.7 138 78.3
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.4e-52 209.9 138 78.3
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.4e-52 209.9 138 78.3
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.4e-52 209.9 138 79.7
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 1.4e-52 209.9 138 77.5
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.8e-52 209.5 136 77.9
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 1.8e-52 209.5 158 70.3
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 5.3e-52 208.0 158 69.6
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 5.3e-52 208.0 158 69.6
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 6.9e-52 207.6 158 70.3
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.5e-51 206.5 139 77.0
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.0e-51 206.1 139 77.0
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.6e-51 205.7 134 79.1
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 2.6e-51 205.7 138 77.5
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 3.4e-51 205.3 139 77.0
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 3.4e-51 205.3 138 75.4
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 7.6e-51 204.1 138 77.5
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 7.6e-51 204.1 133 78.2
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.3e-50 203.4 138 76.8
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 2.9e-50 202.2 138 76.1
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 2.9e-50 202.2 137 75.9
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 4.9e-50 201.4 138 76.1
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.4e-49 199.9 139 74.1
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.4e-49 199.1 137 75.2
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 2.4e-49 199.1 140 74.3
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 4.2e-49 198.4 138 74.6
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 4.2e-49 198.4 130 77.7
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.2e-48 196.8 137 75.2
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 1.6e-48 196.4 138 73.2
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 2.1e-48 196.1 139 71.9
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 2.1e-48 196.1 138 74.6
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 3.5e-48 195.3 138 73.2
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 7.9e-48 194.1 138 71.0
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.0e-47 193.7 138 71.7
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 1.3e-47 193.4 138 73.2
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 1.3e-47 193.4 138 70.3
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.8e-47 193.0 138 70.3
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.3e-47 192.6 135 72.6
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 3.9e-47 191.8 138 70.3
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 3.9e-47 191.8 187 58.8
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 5.1e-47 191.4 135 74.1
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 6.7e-47 191.0 190 59.5
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 8.7e-47 190.7 133 73.7
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 8.7e-47 190.7 135 74.1
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 8.7e-47 190.7 155 65.2
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.1e-46 190.3 135 74.1
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 1.5e-46 189.9 135 74.1
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.5e-46 189.9 140 69.3
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.9e-46 189.5 136 72.1
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 4.3e-46 188.3 136 73.5
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.8e-45 185.7 103 95.1
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 2.8e-45 185.7 147 68.0
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 4.8e-45 184.9 136 69.1
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 6.2e-45 184.5 135 73.3
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 6.2e-45 184.5 152 63.8
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 6.2e-45 184.5 155 64.5
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 8.2e-45 184.1 138 70.3
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 8.2e-45 184.1 135 72.6
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 1.4e-44 183.3 149 65.8
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 1.4e-44 183.3 139 68.3
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.4e-44 183.3 136 69.1
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.4e-44 183.3 135 72.6
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.1e-44 182.2 131 71.8
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 4.0e-44 181.8 125 76.0
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 5.3e-44 181.4 137 68.6
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 5.3e-44 181.4 131 69.5
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.0e-43 179.5 138 67.4
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 4.5e-43 178.3 136 66.9
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 5.8e-43 177.9 124 73.4
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 7.6e-43 177.6 129 71.3
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 1.0e-42 177.2 131 67.2
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.7e-42 176.4 126 70.6
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 4.9e-42 174.9 138 63.8
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 8.4e-42 174.1 131 68.7
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.9e-41 172.9 137 65.0
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.7e-40 169.1 126 71.4
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 7.9e-40 167.5 174 55.2
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 4.3e-38 161.8 135 63.7
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 3.7e-37 158.7 136 60.3
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 4.8e-37 158.3 108 76.9
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.4e-36 156.8 99 83.8
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 5.3e-36 154.8 108 75.9
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 2.6e-35 152.5 105 74.3
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 7.7e-35 151.0 104 78.8
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 1.3e-34 150.2 101 80.2
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 1.7e-34 149.8 101 76.2
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 3.8e-34 148.7 103 73.8
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 7.9e-32 141.0 118 61.0
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.1e-31 138.3 117 59.0
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 4.8e-29 131.7 123 56.1
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 2.0e-27 126.3 88 71.6
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 1.0e-26 124.0 84 72.6
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.0e-26 124.0 132 47.7
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.9e-25 119.8 87 70.1
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 1.6e-24 116.7 79 77.2
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 6.1e-24 114.8 114 62.3
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 6.1e-24 114.8 74 75.7
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 3.5e-19 99.0 88 59.1
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 6.7e-15 84.7 125 40.0
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 4.4e-14 82.0 118 45.8
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.4e-12 77.0 121 40.5
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 1.6e-11 73.6 125 38.4
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 1.6e-11 73.6 66 60.6
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 1.3e-10 70.5 54 72.2
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.3e-10 70.5 42 83.3
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 4.2e-09 65.5 52 65.4
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 5.5e-09 65.1 54 61.1
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 2.3e-07 59.7 39 84.6
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 2.3e-07 59.7 36 86.1
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 7.5e-06 54.7 38 63.2
CSS0047626 Camellia sinensis var. sinensis HOM05D000289 ORTHO05D000208 9.7e-06 54.3 124 30.6


User provided reference genes

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