Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 9.1e-187 656.8 331 100.0
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 8.3e-172 607.1 331 90.3
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.4e-171 606.3 331 90.3
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 1.0e-161 573.5 328 87.5
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 7.5e-157 557.4 329 84.2
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.2e-149 533.5 328 81.7
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.9e-147 526.2 328 80.2
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.9e-147 526.2 328 80.2
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 5.4e-147 524.6 328 80.5
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 7.8e-146 520.8 328 79.9
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 1.8e-126 456.4 325 71.1
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 4.3e-112 408.7 239 84.5
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.1e-107 394.0 327 62.7
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.0e-105 387.5 319 62.4
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.8e-105 386.7 318 60.7
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 3.0e-105 386.0 319 62.1
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 4.8e-103 378.6 293 64.5
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 6.3e-103 378.3 319 61.8
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.8e-102 376.7 300 64.7
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 2.4e-102 376.3 307 62.2
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 2.6e-101 372.9 301 64.1
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 2.6e-101 372.9 302 61.9
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 7.6e-101 371.3 318 61.3
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 8.4e-100 367.9 326 57.7
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.9e-99 366.7 307 59.9
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 4.2e-99 365.5 320 58.1
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 7.2e-99 364.8 297 61.6
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.6e-98 363.6 320 58.8
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.6e-98 363.6 294 61.2
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.3e-97 360.5 318 59.7
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 2.3e-97 359.8 319 57.7
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.9e-97 359.0 318 59.4
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 5.1e-97 358.6 301 60.1
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 8.7e-97 357.8 313 57.2
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.1e-96 357.5 303 59.7
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.1e-96 357.5 319 57.7
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.1e-96 357.5 307 59.3
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.5e-96 357.1 313 56.9
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.9e-96 356.7 300 60.3
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.3e-96 355.9 301 59.5
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 7.4e-96 354.8 301 59.8
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 7.4e-96 354.8 309 57.6
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 9.7e-96 354.4 308 58.8
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 1.6e-95 353.6 325 56.3
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.6e-95 353.6 251 67.7
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 3.7e-95 352.4 312 56.7
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 6.3e-95 351.7 314 54.1
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.3e-95 351.7 306 56.9
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.3e-95 351.7 313 57.8
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 6.3e-95 351.7 315 58.1
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.8e-94 350.1 298 59.1
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 4.1e-94 349.0 301 58.8
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.2e-93 347.4 322 55.9
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-93 347.4 308 59.1
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 1.5e-93 347.1 247 66.4
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.0e-93 346.7 306 56.9
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 2.6e-93 346.3 307 56.4
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 4.5e-93 345.5 316 57.6
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 7.7e-93 344.7 299 59.5
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.3e-92 344.0 301 57.8
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.8e-92 342.4 289 60.9
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 3.8e-92 342.4 301 59.8
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 3.8e-92 342.4 318 56.0
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 8.5e-92 341.3 301 54.5
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.1e-91 340.9 297 57.9
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.4e-91 340.5 327 54.4
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 1.4e-91 340.5 307 57.7
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.9e-91 340.1 308 56.2
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.2e-91 339.0 317 57.4
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.2e-91 338.2 289 59.9
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.2e-90 337.4 292 58.6
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 2.7e-90 336.3 295 59.0
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.7e-90 336.3 292 58.9
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 3.6e-90 335.9 326 55.8
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 4.6e-90 335.5 296 59.8
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 4.6e-90 335.5 296 59.8
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 5.1e-89 332.0 249 63.5
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.1e-88 330.9 296 54.4
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.3e-88 328.9 301 57.1
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.1e-86 324.3 310 52.9
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 1.8e-86 323.6 311 53.7
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 9.1e-86 321.2 306 54.6
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.0e-85 320.1 290 54.1
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 4.5e-85 318.9 292 55.8
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 5.9e-85 318.5 324 53.1
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.0e-84 317.8 298 55.0
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.7e-84 317.0 293 55.6
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.2e-84 316.6 307 51.5
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.8e-84 315.8 307 52.1
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.8e-84 315.8 307 52.4
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.8e-84 315.8 304 53.9
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.5e-84 314.7 300 52.3
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.1e-83 314.3 301 53.2
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 1.1e-83 314.3 298 55.7
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.4e-83 313.9 288 55.6
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.5e-83 313.2 296 55.1
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.6e-82 310.5 319 53.9
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 2.1e-82 310.1 288 54.9
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 3.6e-82 309.3 319 51.7
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.0e-81 307.8 256 59.4
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.8e-81 307.0 258 60.9
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 2.3e-81 306.6 297 54.2
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 3.9e-81 305.8 265 60.8
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 6.7e-81 305.1 275 54.9
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 8.8e-81 304.7 257 58.8
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.1e-80 304.3 307 50.5
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.1e-80 304.3 349 50.7
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.4e-80 301.6 301 52.5
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.7e-79 300.4 307 49.8
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 4.8e-79 298.9 285 53.0
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-78 297.7 295 50.8
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.8e-78 297.0 316 50.3
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.1e-78 296.2 322 50.6
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.3e-78 295.4 294 51.0
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.3e-78 295.4 316 50.0
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 5.3e-78 295.4 326 47.9
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.2e-77 294.3 281 53.0
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.2e-77 294.3 320 47.8
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.0e-77 293.5 302 51.3
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.0e-77 293.5 325 48.6
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.5e-77 292.7 293 51.9
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 4.5e-77 292.4 336 47.0
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 1.0e-76 291.2 290 51.4
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.9e-76 289.7 296 48.6
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 5.0e-76 288.9 287 52.6
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 5.0e-76 288.9 283 50.2
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 8.5e-76 288.1 270 51.9
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.1e-75 287.7 286 50.7
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.5e-75 287.3 268 52.2
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.5e-75 286.6 337 48.4
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 4.2e-75 285.8 270 51.9
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 5.5e-75 285.4 290 50.0
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 7.2e-75 285.0 291 48.5
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.6e-74 283.9 314 47.5
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 2.7e-74 283.1 268 52.2
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.6e-74 282.7 269 50.2
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 4.7e-74 282.3 259 53.7
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 6.1e-74 282.0 260 53.8
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 6.1e-74 282.0 294 48.0
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 8.0e-74 281.6 259 53.7
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.8e-73 280.4 290 49.0
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 6.7e-73 278.5 296 50.0
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 6.7e-73 278.5 290 47.9
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 2.8e-71 273.1 306 48.4
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.2e-69 267.7 242 52.1
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 3.5e-69 266.2 263 54.8
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.7e-68 263.8 253 51.4
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.2e-68 263.5 251 50.2
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 6.5e-68 261.9 300 48.0
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 6.3e-63 245.4 248 47.6
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 5.4e-62 242.3 290 42.8
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 2.2e-60 236.9 157 70.1
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 2.2e-60 236.9 278 45.3
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 8.0e-58 228.4 157 66.2
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 5.2e-57 225.7 197 53.3
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 6.3e-55 218.8 219 51.6
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 8.6e-52 208.4 202 54.0
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.9e-49 198.4 137 71.5
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 4.4e-48 196.1 227 47.1
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.4e-48 196.1 154 60.4
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 3.9e-44 183.0 279 43.4
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 8.6e-44 181.8 184 49.5
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 3.6e-42 176.4 225 43.1
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.8e-41 174.1 92 93.5
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.7e-39 167.5 217 43.8
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 6.4e-39 165.6 265 34.7
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 9.5e-35 151.8 205 41.5
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.1e-33 148.3 107 72.0
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-25 121.7 76 73.7
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 5.2e-25 119.4 91 64.8
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 6.4e-23 112.5 77 63.6
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 2.3e-20 104.0 123 41.5
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 3.0e-20 103.6 77 63.6
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 5.8e-16 89.4 83 53.0
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.1e-09 68.6 56 53.6


User provided reference genes

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