Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 1.9e-189 666.0 415 100.0
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.7e-132 475.3 360 70.0
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 2.3e-123 446.4 333 70.3
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 8.3e-121 438.0 333 69.4
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 7.1e-112 408.3 335 66.0
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 3.3e-109 399.4 335 63.0
Thhalv10009810m.g Eutrema salsugineum HOM05D004824 ORTHO05D017526 4.3e-109 399.1 413 55.0
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 6.2e-108 395.2 415 54.7
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 6.2e-108 395.2 415 54.7
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 6.2e-108 395.2 415 54.7
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 5.3e-99 365.5 311 62.4
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.9e-88 330.5 365 52.9
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 1.8e-86 323.9 332 56.9
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 1.3e-57 228.0 373 41.8
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 2.9e-57 226.9 326 45.7
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 5.2e-54 216.1 358 41.1
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 1.2e-50 204.9 375 40.5
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.5e-48 198.0 340 41.5
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 1.9e-48 197.6 338 40.5
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 2.5e-48 197.2 339 40.7
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 7.2e-48 195.7 331 44.1
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 7.2e-48 195.7 339 40.4
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.0e-46 191.8 341 40.5
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 2.8e-44 183.7 338 39.1
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 7.7e-42 175.6 343 38.5
CARHR014470 Cardamine hirsuta HOM05D004824 ORTHO05D017526 1.6e-39 167.9 171 60.2
AL1G25960 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.3e-38 164.1 236 47.0
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 1.1e-27 128.6 231 39.0
BcaC07g41781 Brassica carinata HOM05D004824 ORTHO05D017526 3.3e-24 117.1 129 57.4
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 8.0e-23 112.5 292 29.8
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.6e-21 107.5 292 27.4
BraA09t41683Z Brassica rapa HOM05D004824 ORTHO05D017526 2.9e-20 104.0 126 54.8
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 8.3e-20 102.4 227 32.6
A09p63320 Brassica napus HOM05D004824 ORTHO05D017526 1.4e-19 101.7 126 54.0
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.8e-19 101.3 344 24.7
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 1.6e-18 98.2 169 37.3
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 2.0e-18 97.8 204 32.4
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.6e-18 96.7 168 38.7
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 5.9e-18 96.3 168 38.1
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 5.9e-18 96.3 168 38.1
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 5.9e-18 96.3 302 27.5
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 7.8e-18 95.9 168 38.1
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 1.0e-17 95.5 137 38.0
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.3e-17 95.1 137 38.0
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 1.3e-17 95.1 182 34.6
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 1.7e-17 94.7 198 32.3
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.7e-17 94.7 132 40.9
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 3.9e-17 93.6 133 41.4
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 6.6e-17 92.8 255 26.3
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 8.6e-17 92.4 174 33.3
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 2.5e-16 90.9 154 37.0
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 3.3e-16 90.5 154 35.7
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 5.6e-16 89.7 194 32.5
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 7.3e-16 89.4 149 33.6
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 1.2e-15 88.6 147 36.1
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.6e-15 88.2 125 36.0
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 2.1e-15 87.8 124 41.1
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 2.1e-15 87.8 192 32.3
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 4.7e-15 86.7 127 37.8
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 8.0e-15 85.9 133 36.8
BolC8t52358H Brassica oleracea HOM05D004824 ORTHO05D017526 1.1e-14 85.5 78 59.0
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 1.4e-14 85.1 123 39.8
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 1.8e-14 84.7 133 35.3
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 1.8e-14 84.7 123 38.2
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 2.3e-14 84.3 173 34.7
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 5.2e-14 83.2 256 28.1
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 6.8e-14 82.8 158 32.3
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 6.8e-14 82.8 159 31.4
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 1.2e-13 82.0 303 23.8
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 1.5e-13 81.6 123 39.0
CARHR257510 Cardamine hirsuta HOM05D004824 ORTHO05D003903 2.6e-13 80.9 106 41.5
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 3.4e-13 80.5 136 38.2
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 5.8e-13 79.7 155 29.0
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 7.5e-13 79.3 302 23.8
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 7.5e-13 79.3 145 31.0
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 7.5e-13 79.3 183 29.5
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 1.7e-12 78.2 169 30.2
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 4.9e-12 76.6 117 33.3
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 1.1e-11 75.5 175 25.7
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 1.1e-11 75.5 114 34.2
Thhalv10009488m.g Eutrema salsugineum HOM05D004824 ORTHO05D031114 2.4e-11 74.3 158 35.4
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 5.4e-11 73.2 130 34.6
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 5.4e-11 73.2 122 36.9
CARHR258930 Cardamine hirsuta HOM05D004824 ORTHO05D003903 9.2e-11 72.4 88 46.6
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.6e-10 71.6 172 32.6
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 1.6e-10 71.6 183 29.0
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 3.5e-10 70.5 126 31.7
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 6.0e-10 69.7 121 35.5
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 6.0e-10 69.7 159 30.2
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 6.0e-10 69.7 171 29.2
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 1.3e-09 68.6 153 30.7
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.3e-09 68.6 147 32.0
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.3e-09 68.6 273 25.3
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 1.3e-09 68.6 205 26.3
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 1.7e-09 68.2 291 26.5
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 3.0e-09 67.4 192 28.6
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 5.0e-09 66.6 166 28.9
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 6.6e-09 66.2 139 32.4
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 8.6e-09 65.9 132 34.1
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 3.3e-08 63.9 131 33.6
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.3e-08 63.9 183 29.5
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 5.6e-08 63.2 152 30.9
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 7.3e-08 62.8 164 29.9
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.6e-07 61.6 286 20.6
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 1.6e-07 61.6 128 29.7
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 1.6e-07 61.6 148 31.8
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 2.1e-07 61.2 139 30.2
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 2.1e-07 61.2 148 30.4
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 2.8e-07 60.8 118 31.4
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.6e-07 60.5 145 25.5
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 3.6e-07 60.5 320 20.3
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 4.7e-07 60.1 122 32.8
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 4.7e-07 60.1 124 33.1
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 6.2e-07 59.7 126 33.3
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 1.1e-06 58.9 223 24.7
BcaB01g00827 Brassica carinata HOM05D002460 ORTHO05D002716 1.4e-06 58.5 276 26.1
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 5.2e-06 56.6 100 32.0
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 5.2e-06 56.6 126 31.7
COL.COLO4_22429 Corchorus olitorius HOM05D000173 ORTHO05D003903 6.8e-06 56.2 91 37.4
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 6.8e-06 56.2 117 29.9
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 6.8e-06 56.2 79 43.0
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 8.9e-06 55.8 169 25.4


User provided reference genes

Program Settings